Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_H22
(258 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c... 28 0.24
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 27 0.54
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc... 25 1.3
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 25 1.3
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha... 25 2.2
SPBC23E6.03c |nta1||protein N-terminal amidase Nta1 |Schizosacch... 25 2.2
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 24 2.9
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb... 24 2.9
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 24 3.8
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 24 3.8
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc... 24 3.8
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ... 24 3.8
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c... 23 5.1
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida... 23 5.1
SPBC11C11.10 ||SPBC3B8.13c|pseudouridine synthase|Schizosaccharo... 23 5.1
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc... 23 5.1
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo... 23 5.1
SPAC13G7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 23 5.1
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 23 6.7
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch... 23 6.7
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 23 6.7
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 23 6.7
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 23 6.7
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 23 6.7
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 23 6.7
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 23 6.7
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 23 6.7
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 23 6.7
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 23 6.7
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 23 6.7
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 23 6.7
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 23 8.9
SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|c... 23 8.9
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit... 23 8.9
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom... 23 8.9
>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 596
Score = 27.9 bits (59), Expect = 0.24
Identities = 13/76 (17%), Positives = 32/76 (42%)
Frame = +2
Query: 29 NTTSLVAKAISTTSPNVYQIKTITGISRFHDVLAKYPDITRPAGDPTKRMVKHSTVHYIR 208
N +S A A+ T +P+ + ++ + + + + P + + ++
Sbjct: 434 NPSSGAASAVITRNPSETSLADLSRVPSYKEATRSAVPLESPLQSTLPSYEDVARIEHLS 493
Query: 209 TTPGPTVVSQPRRLAP 256
P P +V+ P+R +P
Sbjct: 494 RPPSPGIVTPPQRTSP 509
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 26.6 bits (56), Expect = 0.54
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +2
Query: 20 LIDNTTSLVAKAISTTSPNVYQIKTITGISRFHDVLAKYPDIT 148
LI + + +STTS + KTIT S D + Y D T
Sbjct: 85 LISTSGQFTSNNVSTTSSQRHNTKTITFFSGTSDYTSVYYDTT 127
>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 329
Score = 25.4 bits (53), Expect = 1.3
Identities = 7/39 (17%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Frame = -1
Query: 114 KREIPVMV-LIWYTLGDVVEIALATNEVVLSISLLCPSC 1
+RE+ +++ ++W + ++ + + + +++L+ +L+C +C
Sbjct: 160 RREMMIIIWILWLIICCILFVYIKSGDLILNKALICSTC 198
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 25.4 bits (53), Expect = 1.3
Identities = 11/46 (23%), Positives = 25/46 (54%)
Frame = +2
Query: 14 NRLIDNTTSLVAKAISTTSPNVYQIKTITGISRFHDVLAKYPDITR 151
N +D + +V K ++ ++++ I + F+D+++ P ITR
Sbjct: 631 NAALDLISLIVNKVLALFDLSLFEKHNIPAPTNFNDIISFIPSITR 676
>SPCC777.09c |arg1||acetylornithine
aminotransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 441
Score = 24.6 bits (51), Expect = 2.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 83 QIKTITGISRFHDVLAKYPDITR 151
Q K +T SRF D +AKYP++ R
Sbjct: 353 QHKALT--SRFDDFVAKYPNLIR 373
>SPBC23E6.03c |nta1||protein N-terminal amidase Nta1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 286
Score = 24.6 bits (51), Expect = 2.2
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = +3
Query: 51 KQFLLHHLTCTKLRPLQVFPAFTTYWQNIRTSRALLETQQSAWSSILPCITFAQ 212
+Q L H + L VFP N + S ++ ++ S+ P I FAQ
Sbjct: 23 RQLLDQHSEALQSVKLLVFPEMCLTGYNFKNSESIQPFLENVTSNHCPSIQFAQ 76
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 24.2 bits (50), Expect = 2.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 72 LTCTKLRPLQVFPAFTTYWQNIRTSRAL 155
L+ + RP +VFP F+T ++ SR L
Sbjct: 645 LSASVRRPSKVFPLFSTSFETTPISRKL 672
>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 224
Score = 24.2 bits (50), Expect = 2.9
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +2
Query: 134 YPDITRPAGDPTKRMVKHSTVHYIRTTPGPTVV 232
Y D RP G +R + V + R PG VV
Sbjct: 151 YKDSGRPCGRCARRFGRSYDVQFSRPPPGALVV 183
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 23.8 bits (49), Expect = 3.8
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 54 QFLLHHLTCTKLRPLQVFPAFTTYWQNIRTSRALLETQQSAWSSILPCI 200
Q L+H T ++L PL+VF + + TSR + S PC+
Sbjct: 79 QCYLYHSTNSQLEPLEVFHLHKLH-SAVFTSRRDPSFADDLFESSKPCL 126
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 23.8 bits (49), Expect = 3.8
Identities = 7/31 (22%), Positives = 18/31 (58%)
Frame = -3
Query: 214 SCANVMHGRMLDHALCWVSSRARDVRIFCQY 122
+C +V+ +++ LC + S+ + +C+Y
Sbjct: 169 ACDHVLERPAVENMLCMICSKVQPAAQYCKY 199
>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 23.8 bits (49), Expect = 3.8
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +2
Query: 20 LIDNTTSLVAKAISTTSPNVYQ--IKTITGISRFHDVLAKYPDITRPAGDPTKRMVKHST 193
L + T+ ++ ++ +TS ++ I+TIT D L K P++ P K +V H T
Sbjct: 230 LAEPKTAELSNSMKSTSMFAFKEGIETIT--LSIADELKKMPNVKIHLNKPAKTLVPHKT 287
>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
pyridoxine, pyridoxal, and pyridoxamine
Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 23.8 bits (49), Expect = 3.8
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = -1
Query: 186 CLTMRFVGSPAGRVMSGYFANTS*KREIPVMVLIWYTLGDVVEIALATNEVVLSIS 19
CL+M +GS G + G ++ ++ + + YT+ + + AL N V + IS
Sbjct: 122 CLSMNILGSGLGPMFLGPLSDIGGRKPVYFCSIFVYTVFN-ISCALPRNIVQMIIS 176
>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 581
Score = 23.4 bits (48), Expect = 5.1
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +3
Query: 105 FPAFTTYWQNIRTSRALLETQQSAWSSILPCI 200
F + T W R + + E + W ILPCI
Sbjct: 404 FGDYFTLWAAKRNN-GIKEAESRLWLMILPCI 434
>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 494
Score = 23.4 bits (48), Expect = 5.1
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +2
Query: 80 YQIKTITGISRFHDVLAKYPDITRPAGDPTKRMVKHSTVHYIRTTPGPTVVSQ 238
Y+ K +G+S F D LA P G+ K +++ +Y+ +T +++ Q
Sbjct: 79 YETKKFSGVSHFMDRLAFQATERTPVGE-MKAKLENLGGNYMCSTSRESMIYQ 130
>SPBC11C11.10 ||SPBC3B8.13c|pseudouridine
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 407
Score = 23.4 bits (48), Expect = 5.1
Identities = 13/54 (24%), Positives = 22/54 (40%)
Frame = +2
Query: 86 IKTITGISRFHDVLAKYPDITRPAGDPTKRMVKHSTVHYIRTTPGPTVVSQPRR 247
++ I G + HD+LAK P K K T + + V+ P++
Sbjct: 258 LRPIEGGAERHDLLAKTEQDINPQDGDEKINAKSPTTNSVTDVAKDQTVTNPKK 311
>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 835
Score = 23.4 bits (48), Expect = 5.1
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 77 VYQIKTITGISRFHDVLAKYPDITR 151
V QIK I+ F +L +YPD +
Sbjct: 574 VLQIKQQMAIASFFQILNEYPDAVK 598
>SPBC215.01 ||SPBC3B9.20|GTPase activating
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 23.4 bits (48), Expect = 5.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 115 SRRIGKISGHHAPCWRPNKAHG 180
+ RIGK H P RP+ A+G
Sbjct: 760 TNRIGKTFRGHKPASRPSTANG 781
>SPAC13G7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 135
Score = 23.4 bits (48), Expect = 5.1
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 160 RPNKAHGQAFYRALHSHNSGADRRQ 234
RPNK R + SHN G + R+
Sbjct: 43 RPNKVFLNNMVRNVQSHNRGINNRR 67
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 6.7
Identities = 15/61 (24%), Positives = 24/61 (39%)
Frame = +3
Query: 66 HHLTCTKLRPLQVFPAFTTYWQNIRTSRALLETQQSAWSSILPCITFAQLRGRPSSANHV 245
H+L T + P ++ I + + W L F ++ RP SANH+
Sbjct: 768 HYLEST-IEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNF-EINYRPGSANHI 825
Query: 246 A 248
A
Sbjct: 826 A 826
>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 783
Score = 23.0 bits (47), Expect = 6.7
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +1
Query: 97 YRYFPLSRRIGKISGHHAPCWRPN 168
Y YF LS +G H C PN
Sbjct: 376 YTYFGLSLSAAVANGLHRSCENPN 399
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 6.7
Identities = 15/61 (24%), Positives = 24/61 (39%)
Frame = +3
Query: 66 HHLTCTKLRPLQVFPAFTTYWQNIRTSRALLETQQSAWSSILPCITFAQLRGRPSSANHV 245
H+L T + P ++ I + + W L F ++ RP SANH+
Sbjct: 768 HYLEST-IEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNF-EINYRPGSANHI 825
Query: 246 A 248
A
Sbjct: 826 A 826
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 6.7
Identities = 15/61 (24%), Positives = 24/61 (39%)
Frame = +3
Query: 66 HHLTCTKLRPLQVFPAFTTYWQNIRTSRALLETQQSAWSSILPCITFAQLRGRPSSANHV 245
H+L T + P ++ I + + W L F ++ RP SANH+
Sbjct: 768 HYLEST-IEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNF-EINYRPGSANHI 825
Query: 246 A 248
A
Sbjct: 826 A 826
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 6.7
Identities = 15/61 (24%), Positives = 24/61 (39%)
Frame = +3
Query: 66 HHLTCTKLRPLQVFPAFTTYWQNIRTSRALLETQQSAWSSILPCITFAQLRGRPSSANHV 245
H+L T + P ++ I + + W L F ++ RP SANH+
Sbjct: 768 HYLEST-IEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNF-EINYRPGSANHI 825
Query: 246 A 248
A
Sbjct: 826 A 826
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 6.7
Identities = 15/61 (24%), Positives = 24/61 (39%)
Frame = +3
Query: 66 HHLTCTKLRPLQVFPAFTTYWQNIRTSRALLETQQSAWSSILPCITFAQLRGRPSSANHV 245
H+L T + P ++ I + + W L F ++ RP SANH+
Sbjct: 768 HYLEST-IEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNF-EINYRPGSANHI 825
Query: 246 A 248
A
Sbjct: 826 A 826
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 6.7
Identities = 15/61 (24%), Positives = 24/61 (39%)
Frame = +3
Query: 66 HHLTCTKLRPLQVFPAFTTYWQNIRTSRALLETQQSAWSSILPCITFAQLRGRPSSANHV 245
H+L T + P ++ I + + W L F ++ RP SANH+
Sbjct: 768 HYLEST-IEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNF-EINYRPGSANHI 825
Query: 246 A 248
A
Sbjct: 826 A 826
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 23.0 bits (47), Expect = 6.7
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +3
Query: 45 LPKQFLLHHLTCTKLRPLQVFPAFTTYWQNI-RTSRALLETQQ 170
LP+++LL L C L + V P + I RT+ +LL Q+
Sbjct: 124 LPEEWLLSRLDCKFLENINVVPNGDFLNRKIVRTNTSLLYRQK 166
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 6.7
Identities = 15/61 (24%), Positives = 24/61 (39%)
Frame = +3
Query: 66 HHLTCTKLRPLQVFPAFTTYWQNIRTSRALLETQQSAWSSILPCITFAQLRGRPSSANHV 245
H+L T + P ++ I + + W L F ++ RP SANH+
Sbjct: 768 HYLEST-IEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNF-EINYRPGSANHI 825
Query: 246 A 248
A
Sbjct: 826 A 826
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 6.7
Identities = 15/61 (24%), Positives = 24/61 (39%)
Frame = +3
Query: 66 HHLTCTKLRPLQVFPAFTTYWQNIRTSRALLETQQSAWSSILPCITFAQLRGRPSSANHV 245
H+L T + P ++ I + + W L F ++ RP SANH+
Sbjct: 768 HYLEST-IEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNF-EINYRPGSANHI 825
Query: 246 A 248
A
Sbjct: 826 A 826
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 6.7
Identities = 15/61 (24%), Positives = 24/61 (39%)
Frame = +3
Query: 66 HHLTCTKLRPLQVFPAFTTYWQNIRTSRALLETQQSAWSSILPCITFAQLRGRPSSANHV 245
H+L T + P ++ I + + W L F ++ RP SANH+
Sbjct: 768 HYLEST-IEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNF-EINYRPGSANHI 825
Query: 246 A 248
A
Sbjct: 826 A 826
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 6.7
Identities = 15/61 (24%), Positives = 24/61 (39%)
Frame = +3
Query: 66 HHLTCTKLRPLQVFPAFTTYWQNIRTSRALLETQQSAWSSILPCITFAQLRGRPSSANHV 245
H+L T + P ++ I + + W L F ++ RP SANH+
Sbjct: 768 HYLEST-IEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNF-EINYRPGSANHI 825
Query: 246 A 248
A
Sbjct: 826 A 826
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 6.7
Identities = 15/61 (24%), Positives = 24/61 (39%)
Frame = +3
Query: 66 HHLTCTKLRPLQVFPAFTTYWQNIRTSRALLETQQSAWSSILPCITFAQLRGRPSSANHV 245
H+L T + P ++ I + + W L F ++ RP SANH+
Sbjct: 768 HYLEST-IEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNF-EINYRPGSANHI 825
Query: 246 A 248
A
Sbjct: 826 A 826
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2685
Score = 22.6 bits (46), Expect = 8.9
Identities = 8/25 (32%), Positives = 13/25 (52%)
Frame = +2
Query: 80 YQIKTITGISRFHDVLAKYPDITRP 154
YQ+K ++ + + H V Y I P
Sbjct: 839 YQLKDLSDLEKLHQVTCSYISIRIP 863
>SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 101
Score = 22.6 bits (46), Expect = 8.9
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -1
Query: 63 VEIALATNEVVLSISLLCPSC 1
V+ A+A N+VV+ CP C
Sbjct: 8 VDSAVADNDVVVFAKSYCPYC 28
>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 542
Score = 22.6 bits (46), Expect = 8.9
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 196 ALHSHNSGADRRQPTTSLSAG 258
ALHSH +G + TS S G
Sbjct: 215 ALHSHKAGIEDELDITSKSIG 235
>SPCC1235.10c |sec6||exocyst complex subunit
Sec6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 730
Score = 22.6 bits (46), Expect = 8.9
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +3
Query: 153 LLETQQSAWSSILPCITFAQLRGRPSS 233
++++ Q W S++ QL G P S
Sbjct: 443 IMQSMQDQWKSVMRSELSQQLSGNPES 469
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,076,582
Number of Sequences: 5004
Number of extensions: 19596
Number of successful extensions: 77
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 51555950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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