Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_H22
         (258 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB001636-1|BAA23987.1|  813|Homo sapiens ATP-dependent RNA helic...    32   0.38 
AF464850-1|AAM90910.1|  757|Homo sapiens Smad-ubiquitin E3 ligas...    29   2.0  
AB046845-1|BAB13451.1|  859|Homo sapiens KIAA1625 protein protein.     29   2.0  
AK022178-1|BAB13977.1|  486|Homo sapiens protein ( Homo sapiens ...    27   8.2  

>AB001636-1|BAA23987.1|  813|Homo sapiens ATP-dependent RNA helicase
           #46 protein.
          Length = 813

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
 Frame = +2

Query: 110 RFHDVLAKYPD--ITRPAGDPTKRMVKHSTVHYIRTTPGP---TVVSQPRRLA 253
           RF D+L ++    +    G      + H  V Y+R+ PGP      +QPRR+A
Sbjct: 145 RFTDILGRHQSFVLVGETGSGKTTQIPHRCVEYMRSLPGPKRGVACTQPRRVA 197


>AF464850-1|AAM90910.1|  757|Homo sapiens Smad-ubiquitin E3 ligase
           Smurf1-beta protein.
          Length = 757

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 59  STTSPNVYQIKTITGISRFHDVLAKYPDITRPAGD 163
           +T    VY + T TG+S +HD     P  T P GD
Sbjct: 244 TTVQGQVYFLHTQTGVSTWHDPRIPSPSGTIPGGD 278


>AB046845-1|BAB13451.1|  859|Homo sapiens KIAA1625 protein protein.
          Length = 859

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 59  STTSPNVYQIKTITGISRFHDVLAKYPDITRPAGD 163
           +T    VY + T TG+S +HD     P  T P GD
Sbjct: 346 TTVQGQVYFLHTQTGVSTWHDPRIPSPSGTIPGGD 380


>AK022178-1|BAB13977.1|  486|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12116 fis, clone MAMMA1000069. ).
          Length = 486

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 21/68 (30%), Positives = 30/68 (44%)
 Frame = +3

Query: 45  LPKQFLLHHLTCTKLRPLQVFPAFTTYWQNIRTSRALLETQQSAWSSILPCITFAQLRGR 224
           LP   L HHL       LQV P+ + ++  +R   AL  +  S + S     T +  R  
Sbjct: 128 LPFHILCHHLRFNLKEVLQVMPSDSFFFSIVRDPAALARSAFSYYKS-----TSSAFRKS 182

Query: 225 PSSANHVA 248
           PS A  +A
Sbjct: 183 PSLAAFLA 190


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,980,773
Number of Sequences: 237096
Number of extensions: 793563
Number of successful extensions: 1526
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1526
length of database: 76,859,062
effective HSP length: 63
effective length of database: 61,922,014
effective search space used: 1362284308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)