Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_H22
         (258 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46241-2|CAA86315.1|  144|Caenorhabditis elegans Hypothetical pr...    27   1.4  
Z46241-1|CAA86323.1|  462|Caenorhabditis elegans Hypothetical pr...    27   1.4  
U40414-2|AAA81405.2|  634|Caenorhabditis elegans Hypothetical pr...    27   1.8  
Z99709-3|CAB54198.1|  231|Caenorhabditis elegans Hypothetical pr...    26   3.2  
Z99709-2|CAB16859.1|  307|Caenorhabditis elegans Hypothetical pr...    26   3.2  
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr...    26   4.2  
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr...    26   4.2  
Z70754-5|CAA94775.1|  304|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z98877-7|CAB63403.1|  292|Caenorhabditis elegans Hypothetical pr...    25   9.8  
Z22180-5|CAA80174.2|  717|Caenorhabditis elegans Hypothetical pr...    25   9.8  
U50197-3|AAA91256.2|  327|Caenorhabditis elegans Hypothetical pr...    25   9.8  
U00065-9|AAA50738.2| 1009|Caenorhabditis elegans Hypothetical pr...    25   9.8  

>Z46241-2|CAA86315.1|  144|Caenorhabditis elegans Hypothetical
           protein C38D4.1b protein.
          Length = 144

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +2

Query: 59  STTSPNVYQIKTITGISRFHDVL---AKYPDITRPAGDPTKRM 178
           +TT+PNV  +   T  S         AK P+ T PAG+PTK +
Sbjct: 22  TTTTPNV-PVSAATNTSNVTAPAGNSAKSPNATAPAGNPTKNV 63


>Z46241-1|CAA86323.1|  462|Caenorhabditis elegans Hypothetical
           protein C38D4.1a protein.
          Length = 462

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +2

Query: 59  STTSPNVYQIKTITGISRFHDVL---AKYPDITRPAGDPTKRM 178
           +TT+PNV  +   T  S         AK P+ T PAG+PTK +
Sbjct: 22  TTTTPNV-PVSAATNTSNVTAPAGNSAKSPNATAPAGNPTKNV 63


>U40414-2|AAA81405.2|  634|Caenorhabditis elegans Hypothetical
           protein F53B3.2 protein.
          Length = 634

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
 Frame = +2

Query: 59  STTSPNVYQIKTITGISRFHDVLAK-----YPDITRPAGDPTKRMVKHSTVHYIR 208
           +TTSP   Q+KTI   +    +  K     +P  TRP    T + V  ST  +IR
Sbjct: 244 TTTSPPTTQVKTILPATEAQKIFTKPQYQIWPTTTRPM-TSTSQAVISSTEQFIR 297


>Z99709-3|CAB54198.1|  231|Caenorhabditis elegans Hypothetical
           protein C47B2.2b protein.
          Length = 231

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 14/53 (26%), Positives = 20/53 (37%)
 Frame = +2

Query: 44  VAKAISTTSPNVYQIKTITGISRFHDVLAKYPDITRPAGDPTKRMVKHSTVHY 202
           V K       N+Y +      +   ++  KYP IT  A D T     H +  Y
Sbjct: 175 VLKEARVPDENIYLVSLFISPTGLKNITRKYPYITVVASDITSLYPNHFSTSY 227


>Z99709-2|CAB16859.1|  307|Caenorhabditis elegans Hypothetical
           protein C47B2.2a protein.
          Length = 307

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 14/53 (26%), Positives = 20/53 (37%)
 Frame = +2

Query: 44  VAKAISTTSPNVYQIKTITGISRFHDVLAKYPDITRPAGDPTKRMVKHSTVHY 202
           V K       N+Y +      +   ++  KYP IT  A D T     H +  Y
Sbjct: 251 VLKEARVPDENIYLVSLFISPTGLKNITRKYPYITVVASDITSLYPNHFSTSY 303


>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical
           protein T04F3.1 protein.
          Length = 3517

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 15/66 (22%), Positives = 25/66 (37%)
 Frame = +2

Query: 11  HNRLIDNTTSLVAKAISTTSPNVYQIKTITGISRFHDVLAKYPDITRPAGDPTKRMVKHS 190
           + + +D  T       S +   +     +T  SR  D L        P   P KR+ +  
Sbjct: 285 YRKFVDEETKGADDDSSDSGSVIIYRDAVTRRSRSADPLQNSSPTMSPIAPPRKRLGREE 344

Query: 191 TVHYIR 208
           ++HY R
Sbjct: 345 SLHYYR 350


>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical
           protein T04F3.1 protein.
          Length = 3517

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 15/66 (22%), Positives = 25/66 (37%)
 Frame = +2

Query: 11  HNRLIDNTTSLVAKAISTTSPNVYQIKTITGISRFHDVLAKYPDITRPAGDPTKRMVKHS 190
           + + +D  T       S +   +     +T  SR  D L        P   P KR+ +  
Sbjct: 285 YRKFVDEETKGADDDSSDSGSVIIYRDAVTRRSRSADPLQNSSPTMSPIAPPRKRLGREE 344

Query: 191 TVHYIR 208
           ++HY R
Sbjct: 345 SLHYYR 350


>Z70754-5|CAA94775.1|  304|Caenorhabditis elegans Hypothetical
          protein F58E6.5 protein.
          Length = 304

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 20 LIDNTTSLVAKAISTTSPNVYQ 85
          +I+N+TS VA     T PNVY+
Sbjct: 33 VINNSTSDVAVKFKNTGPNVYK 54


>Z98877-7|CAB63403.1|  292|Caenorhabditis elegans Hypothetical
           protein Y69H2.6 protein.
          Length = 292

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +3

Query: 60  LLHHLTCTKLRPLQVFPAFTTYWQNIRTS--RALLETQQSAWS 182
           L H L CTK + L +  +F   W+  + S  R L+  Q+S +S
Sbjct: 93  LFHPLICTKSKELCLNRSFPEGWKKEKHSLRRVLVVLQRSFYS 135


>Z22180-5|CAA80174.2|  717|Caenorhabditis elegans Hypothetical
           protein K11H3.4 protein.
          Length = 717

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 112 LSRRIGKISGHHAPCWR 162
           LSRR+GK+  +H  C+R
Sbjct: 227 LSRRVGKLFKNHVCCFR 243


>U50197-3|AAA91256.2|  327|Caenorhabditis elegans Hypothetical
           protein F25E2.3 protein.
          Length = 327

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 184 LDHALCWVSSRARDVRIFCQYVVKA 110
           +D  + ++  R RD R FC  VVKA
Sbjct: 98  VDKPILYMIDRIRDGRSFCTRVVKA 122


>U00065-9|AAA50738.2| 1009|Caenorhabditis elegans Hypothetical
           protein D1044.6 protein.
          Length = 1009

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 38  SLVAKAISTTSPNVYQIKTITGISRFHDVLAKYPDITRPAGDPTKR 175
           SLV   ++ +   V + K I  I R+HD++  +   TRP    +K+
Sbjct: 204 SLVPHTLTKSHKPVAERKQIL-IERYHDLMNDFDYATRPGSVESKK 248


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,106,050
Number of Sequences: 27780
Number of extensions: 116264
Number of successful extensions: 314
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of database: 12,740,198
effective HSP length: 64
effective length of database: 10,962,278
effective search space used: 230207838
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)