Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_H22
         (258 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    19   7.4  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    19   7.4  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    19   7.4  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    19   9.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    19   9.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    19   9.8  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 19.4 bits (38), Expect = 7.4
 Identities = 5/10 (50%), Positives = 10/10 (100%)
 Frame = +2

Query: 68  SPNVYQIKTI 97
           +PNVY+++T+
Sbjct: 456 NPNVYKVETV 465



 Score = 19.0 bits (37), Expect = 9.8
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 203 IRTTPGPTVVSQP 241
           I  T GP VVS P
Sbjct: 180 ITNTSGPGVVSNP 192


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 19.4 bits (38), Expect = 7.4
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -1

Query: 87  IWYTLGDVVEIALATNEVVLSISLL 13
           ++YT+G + E+A       L I L+
Sbjct: 141 VYYTMGQIREVARHFYHKELQIELV 165


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 19.4 bits (38), Expect = 7.4
 Identities = 5/10 (50%), Positives = 10/10 (100%)
 Frame = +2

Query: 68  SPNVYQIKTI 97
           +PNVY+++T+
Sbjct: 456 NPNVYKVETV 465



 Score = 19.0 bits (37), Expect = 9.8
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 203 IRTTPGPTVVSQP 241
           I  T GP VVS P
Sbjct: 180 ITNTSGPGVVSNP 192


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +2

Query: 65  TSPNVYQIKTITGISRFHDVLA 130
           +S  +Y+ KT+   +R H ++A
Sbjct: 94  SSVTLYRNKTVKYSARMHAIIA 115


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 40  VSCQSNFYYI 69
           +SC +N YYI
Sbjct: 107 LSCWTNIYYI 116


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 40  VSCQSNFYYI 69
           +SC +N YYI
Sbjct: 160 LSCWTNIYYI 169


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,764
Number of Sequences: 438
Number of extensions: 1445
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4636803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)