Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_H20
         (256 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc...    30   0.056
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    24   2.8  
SPAC7D4.05 |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual      24   3.7  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    23   4.9  
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p...    23   6.4  
SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual        23   8.5  

>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
           Sec9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 29.9 bits (64), Expect = 0.056
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +1

Query: 133 NNFSGNDYNQQNYSGPATNYYNMY*QAPPMNNAGKFGA 246
           N++S N YN  N S       N Y      NN G +GA
Sbjct: 41  NSYSSNSYNDNNNSNSTYGSSNNYGNYGSSNNYGSYGA 78


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 24.2 bits (50), Expect = 2.8
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 123 WLAQQLLRERLQPTELFRTGDQLLQYVLA 209
           +L Q ++RERLQ   +   GD LL+++ A
Sbjct: 530 FLPQLIMRERLQGPVVSIIGDILLEWIHA 558


>SPAC7D4.05 |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 129 AQQLLRERLQPTELFRTGDQLLQYVLA 209
           A +LL + +QP E    GD L++ V A
Sbjct: 175 AVKLLGQEIQPEECMHLGDDLIKDVSA 201


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
            Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 23.4 bits (48), Expect = 4.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 177  TGDQLLQYVLAGPTYEQRWK 236
            TG+ L  Y+  GP Y Q+ K
Sbjct: 1025 TGETLEAYIFMGPIYYQKLK 1044


>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 464

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 133 NNFSGNDYNQQNYSGPATN 189
           NN   ND+N Q+YS    N
Sbjct: 97  NNIGINDFNHQHYSRVCRN 115


>SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 136 NFSGNDYNQQNYSGP 180
           N   N Y   NYSGP
Sbjct: 87  NTGANSYGNPNYSGP 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 641,307
Number of Sequences: 5004
Number of extensions: 5970
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 49493712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)