Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_H20
         (256 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1451 - 26623913-26624123,26624504-26624593,26624691-266249...    25   6.4  
06_03_1172 - 28147957-28148274,28149362-28149877                       25   6.4  

>07_03_1451 -
          26623913-26624123,26624504-26624593,26624691-26624920,
          26625692-26625794,26625908-26626150,26626263-26626352,
          26626537-26626808
          Length = 412

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -1

Query: 43 DCPAYHCTSCRSL 5
          DCP  HC SC  L
Sbjct: 60 DCPGKHCASCAGL 72


>06_03_1172 - 28147957-28148274,28149362-28149877
          Length = 277

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -2

Query: 234 SSVVHRWGLLVHIVVV 187
           SSV+H WGL V +V+V
Sbjct: 57  SSVLHYWGLAVAVVLV 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,377,793
Number of Sequences: 37544
Number of extensions: 40881
Number of successful extensions: 115
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 14,793,348
effective HSP length: 63
effective length of database: 12,428,076
effective search space used: 260989596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)