Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_H20
(256 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74031-15|CAE45046.1| 261|Caenorhabditis elegans Hypothetical p... 29 0.35
Z99278-4|CAB16492.1| 871|Caenorhabditis elegans Hypothetical pr... 28 1.1
Z99278-3|CAB16493.1| 867|Caenorhabditis elegans Hypothetical pr... 28 1.1
AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and bel... 26 3.2
AF039716-7|AAB96735.3| 617|Caenorhabditis elegans Sodium:neurot... 25 5.6
Z99281-39|CAE45094.2| 665|Caenorhabditis elegans Hypothetical p... 25 7.4
Z99281-38|CAE45095.2| 845|Caenorhabditis elegans Hypothetical p... 25 7.4
Z99281-36|CAB16527.3| 862|Caenorhabditis elegans Hypothetical p... 25 7.4
Z99281-34|CAJ44243.1| 917|Caenorhabditis elegans Hypothetical p... 25 7.4
AY611484-1|AAT37523.1| 917|Caenorhabditis elegans epidermal gro... 25 7.4
AF077544-1|AAK39241.2| 231|Caenorhabditis elegans Hypothetical ... 25 7.4
Z77132-1|CAB00859.1| 278|Caenorhabditis elegans Hypothetical pr... 25 9.8
>Z74031-15|CAE45046.1| 261|Caenorhabditis elegans Hypothetical
protein F32D8.14 protein.
Length = 261
Score = 29.5 bits (63), Expect = 0.35
Identities = 13/20 (65%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
Frame = +1
Query: 142 SGNDYNQQN--YSGPATNYY 195
+GNDY QQN Y P TNYY
Sbjct: 43 AGNDYYQQNQQYQQPQTNYY 62
>Z99278-4|CAB16492.1| 871|Caenorhabditis elegans Hypothetical
protein Y53C12B.3b protein.
Length = 871
Score = 27.9 bits (59), Expect = 1.1
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +1
Query: 145 GNDYNQQNYSGPATNYYNMY*Q--APPMNNAGKFG 243
GN Y QQ +SG A Y Q PP +NA +G
Sbjct: 250 GNTYQQQGHSGQAQYYAGPVIQQRPPPPHNAQSYG 284
>Z99278-3|CAB16493.1| 867|Caenorhabditis elegans Hypothetical
protein Y53C12B.3a protein.
Length = 867
Score = 27.9 bits (59), Expect = 1.1
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +1
Query: 145 GNDYNQQNYSGPATNYYNMY*Q--APPMNNAGKFG 243
GN Y QQ +SG A Y Q PP +NA +G
Sbjct: 250 GNTYQQQGHSGQAQYYAGPVIQQRPPPPHNAQSYG 284
>AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform b protein.
Length = 644
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = +1
Query: 130 HNNF--SGNDYNQQNYSGPATNYY 195
+NNF SGN +N + YSG +N +
Sbjct: 58 YNNFADSGNGFNNKRYSGAESNQW 81
>AF039716-7|AAB96735.3| 617|Caenorhabditis elegans
Sodium:neurotransmitter symporterfamily protein 1
protein.
Length = 617
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 153 LQPTELFRTGDQLLQYVLAGPTY 221
+ PTEL TG+ + Y+LA +Y
Sbjct: 346 IHPTELLETGEDQMWYMLAYVSY 368
>Z99281-39|CAE45094.2| 665|Caenorhabditis elegans Hypothetical
protein Y57G11C.24e protein.
Length = 665
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Frame = +1
Query: 130 HNNFSGND-YNQQNYSGPATNYY 195
HNN S YN ++ GPA N Y
Sbjct: 422 HNNSSSTGGYNNGHHQGPAQNVY 444
>Z99281-38|CAE45095.2| 845|Caenorhabditis elegans Hypothetical
protein Y57G11C.24d protein.
Length = 845
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Frame = +1
Query: 130 HNNFSGND-YNQQNYSGPATNYY 195
HNN S YN ++ GPA N Y
Sbjct: 602 HNNSSSTGGYNNGHHQGPAQNVY 624
>Z99281-36|CAB16527.3| 862|Caenorhabditis elegans Hypothetical
protein Y57G11C.24a protein.
Length = 862
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Frame = +1
Query: 130 HNNFSGND-YNQQNYSGPATNYY 195
HNN S YN ++ GPA N Y
Sbjct: 619 HNNSSSTGGYNNGHHQGPAQNVY 641
>Z99281-34|CAJ44243.1| 917|Caenorhabditis elegans Hypothetical
protein Y57G11C.24g protein.
Length = 917
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Frame = +1
Query: 130 HNNFSGND-YNQQNYSGPATNYY 195
HNN S YN ++ GPA N Y
Sbjct: 674 HNNSSSTGGYNNGHHQGPAQNVY 696
>AY611484-1|AAT37523.1| 917|Caenorhabditis elegans epidermal growth
factor receptorpathway substrate 8 splice variant A
protein.
Length = 917
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Frame = +1
Query: 130 HNNFSGND-YNQQNYSGPATNYY 195
HNN S YN ++ GPA N Y
Sbjct: 674 HNNSSSTGGYNNGHHQGPAQNVY 696
>AF077544-1|AAK39241.2| 231|Caenorhabditis elegans Hypothetical
protein H22K11.3 protein.
Length = 231
Score = 25.0 bits (52), Expect = 7.4
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 145 GNDYNQQNYSGPATNYYNMY*QAPPMNN-AGKFGAK 249
G ++ N++GP +N Y+ Q PP N+ G G K
Sbjct: 64 GGNFPMGNWNGPNSNGYSGPQQPPPDNSIKGSVGNK 99
>Z77132-1|CAB00859.1| 278|Caenorhabditis elegans Hypothetical
protein F54D1.1 protein.
Length = 278
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 183 DQLLQYVLAGPTYEQRWKVRSQVE 254
DQL+ Y TY++R K +SQ++
Sbjct: 244 DQLVSYAKMNGTYQERPKRKSQLD 267
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,629,943
Number of Sequences: 27780
Number of extensions: 35943
Number of successful extensions: 149
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 12,740,198
effective HSP length: 63
effective length of database: 10,990,058
effective search space used: 230791218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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