Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_H19
         (192 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    24   3.2  
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    23   4.2  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    23   5.6  
SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy...    23   5.6  
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    23   7.4  
SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ...    22   9.8  
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom...    22   9.8  

>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 832

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 66 HAAAYENTHIPSCRISCSPGG 4
          H AA    +IPS R+S  P G
Sbjct: 29 HTAAIPRLNIPSIRLSDGPNG 49


>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 80  YFISERQHLNGIL*LTYCSI 139
           YF S   H++G++ L +C I
Sbjct: 279 YFFSNGCHMSGVVSLLFCGI 298


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 49  FICCCVSIKFLFYL 90
           F+C CV + FLF L
Sbjct: 160 FLCVCVFLSFLFSL 173


>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 83  NKNFILTQQHMKIHIF 36
           N  FIL   HM +H+F
Sbjct: 111 NYGFILNMVHMYVHVF 126


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 101 AGAQR*NKNFILTQQHMKIHIFP 33
           A A + + NFIL   H+++ I P
Sbjct: 711 AAAYQKDDNFILVNDHLRVTIAP 733


>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 481

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 107 LSAGAQR*NKNFILTQQHMKIHIFPRAE 24
           L A A+  NKN +  Q+H   H   RA+
Sbjct: 326 LEALAEELNKNQLTNQRHEAAHELMRAQ 353


>SPCC663.10 |||methyltransferase, DUF1613 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 502

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -2

Query: 167 LPIL*RQPSKCYSTSIIRC 111
           LPIL R   KCY  SI  C
Sbjct: 378 LPILARLNQKCYFMSIPCC 396


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 751,297
Number of Sequences: 5004
Number of extensions: 11027
Number of successful extensions: 23
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 43
effective length of database: 2,147,306
effective search space used: 42946120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)