Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_H19
         (192 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40942-6|AAP68937.1|  709|Caenorhabditis elegans High temperatur...    26   4.3  
U40942-5|AAC47068.1|  729|Caenorhabditis elegans High temperatur...    26   4.3  
AY070228-1|AAL55425.1|  729|Caenorhabditis elegans HID-1 protein.      26   4.3  
Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z81531-8|CAB04322.2|  344|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z80215-10|CAB02271.3|  175|Caenorhabditis elegans Hypothetical p...    25   7.4  
AF024499-2|AAT48621.1|  576|Caenorhabditis elegans Hypothetical ...    25   9.8  
AF024499-1|AAT48620.1|  941|Caenorhabditis elegans Hypothetical ...    25   9.8  

>U40942-6|AAP68937.1|  709|Caenorhabditis elegans High
           temperature-induced dauerformation protein 1, isoform b
           protein.
          Length = 709

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +1

Query: 55  CCCVSIKFLFYL*APALKRHLIIDVL*HFDG*RHSIGNANL 177
           CC ++ KF+FY+   +    +++ +L H    R+  G   L
Sbjct: 343 CCEINQKFMFYVLKTSDVLDILVPILYHISDARNDSGRVGL 383


>U40942-5|AAC47068.1|  729|Caenorhabditis elegans High
           temperature-induced dauerformation protein 1, isoform a
           protein.
          Length = 729

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +1

Query: 55  CCCVSIKFLFYL*APALKRHLIIDVL*HFDG*RHSIGNANL 177
           CC ++ KF+FY+   +    +++ +L H    R+  G   L
Sbjct: 343 CCEINQKFMFYVLKTSDVLDILVPILYHISDARNDSGRVGL 383


>AY070228-1|AAL55425.1|  729|Caenorhabditis elegans HID-1 protein.
          Length = 729

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +1

Query: 55  CCCVSIKFLFYL*APALKRHLIIDVL*HFDG*RHSIGNANL 177
           CC ++ KF+FY+   +    +++ +L H    R+  G   L
Sbjct: 343 CCEINQKFMFYVLKTSDVLDILVPILYHISDARNDSGRVGL 383


>Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical
           protein W05B2.4 protein.
          Length = 2265

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -1

Query: 159 TMTSAVKMLQYVNYKMPFKCWRSEIK*KFYTHAAAYENTH 40
           T+T  ++  Q +N K+  K WR E K     +    E T+
Sbjct: 228 TLTKVLEFSQEINMKLLKKNWRDEKKRNIVQNCIVQETTN 267


>Z81531-8|CAB04322.2|  344|Caenorhabditis elegans Hypothetical
           protein F36D3.9 protein.
          Length = 344

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 48  NTHIPSCRISCSPG 7
           N   P CR+SC PG
Sbjct: 214 NLQTPPCRLSCQPG 227


>Z80215-10|CAB02271.3|  175|Caenorhabditis elegans Hypothetical
           protein C36B1.6 protein.
          Length = 175

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 43  CIFICCCVSI 72
           CIFICCC  I
Sbjct: 139 CIFICCCCCI 148


>AF024499-2|AAT48621.1|  576|Caenorhabditis elegans Hypothetical
           protein F42G2.4b protein.
          Length = 576

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +2

Query: 95  RQHLNGIL*LTYCSILTADVIVLVTRIYKLIP 190
           R HLNGI  + Y      D IV    + K IP
Sbjct: 71  RMHLNGIEEIKYTPEKPVDTIVAYNGLEKAIP 102


>AF024499-1|AAT48620.1|  941|Caenorhabditis elegans Hypothetical
           protein F42G2.4a protein.
          Length = 941

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +2

Query: 95  RQHLNGIL*LTYCSILTADVIVLVTRIYKLIP 190
           R HLNGI  + Y      D IV    + K IP
Sbjct: 71  RMHLNGIEEIKYTPEKPVDTIVAYNGLEKAIP 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,204,917
Number of Sequences: 27780
Number of extensions: 64268
Number of successful extensions: 117
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 12,740,198
effective HSP length: 43
effective length of database: 11,545,658
effective search space used: 230913160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)