Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_H19
         (192 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    20   3.1  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    19   4.1  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          19   5.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              19   5.4  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      19   5.4  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          19   5.4  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    19   5.4  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    19   7.1  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    19   7.1  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    18   9.4  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 152 RQPSKCYSTSI 120
           R PSKC  TS+
Sbjct: 360 RTPSKCSQTSV 370


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 74  NFYFISERQHLNGIL 118
           NFY+I E    NG++
Sbjct: 412 NFYYIEEYLPGNGVI 426


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 40  YSLVPNILQPW 8
           Y +VP+ LQ W
Sbjct: 398 YQVVPSALQMW 408


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 13  AAGYSARGNM 42
           A GYSARG +
Sbjct: 566 AQGYSARGTL 575


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 40  YSLVPNILQPW 8
           Y +VP+ LQ W
Sbjct: 398 YQVVPSALQMW 408


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 40 YSLVPNILQPW 8
          Y +VP+ LQ W
Sbjct: 24 YQVVPSALQMW 34


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +1

Query: 103 LKRHLIIDVL*HFD 144
           +KRH I+ ++ H D
Sbjct: 142 IKRHPIVTIMGHVD 155


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 5/15 (33%), Positives = 9/15 (60%)
 Frame = -2

Query: 83  NKNFILTQQHMKIHI 39
           N N   + QH++ H+
Sbjct: 119 NNNHYTSHQHLRTHL 133


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -2

Query: 68  LTQQHMKIH 42
           L Q+H+KIH
Sbjct: 318 LIQKHLKIH 326


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +1

Query: 22  YSARGNMCIFICC 60
           +SAR N+  + CC
Sbjct: 184 FSARRNVEYYSCC 196


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,389
Number of Sequences: 438
Number of extensions: 784
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 43
effective length of database: 127,509
effective search space used:  2550180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)