Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_H18
         (260 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha...   122   1e-29
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar...   122   1e-29
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    31   0.033
SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce...    27   0.31 
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    25   1.7  
SPAC13G7.06 |met16||phosphoadenosine phosphosulfate reductase|Sc...    25   2.2  
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|...    25   2.2  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    24   2.9  
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    24   2.9  
SPBC530.01 |gyp1||GTPase activating protein Gyp1 |Schizosaccharo...    23   5.1  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    23   5.1  
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    23   5.1  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    23   5.1  
SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces pom...    23   5.1  
SPAC16E8.17c |||succinate-CoA ligase alpha subunit|Schizosacchar...    23   6.7  
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    23   6.7  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    23   8.8  
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met...    23   8.8  

>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  122 bits (293), Expect = 1e-29
 Identities = 56/81 (69%), Positives = 67/81 (82%)
 Frame = +3

Query: 15  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 194
           MGI+RD  HKR ATG KRA  RKKRK+ELGR  +NT++GP+RIH VR RGGN K+RALRL
Sbjct: 1   MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRL 60

Query: 195 DTGNFAWGSECSTRKTRIIDV 257
           D+GNF+WGSE  ++KTRII V
Sbjct: 61  DSGNFSWGSEGVSKKTRIIQV 81


>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  122 bits (293), Expect = 1e-29
 Identities = 56/81 (69%), Positives = 67/81 (82%)
 Frame = +3

Query: 15  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 194
           MGI+RD  HKR ATG KRA  RKKRK+ELGR  +NT++GP+RIH VR RGGN K+RALRL
Sbjct: 1   MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRL 60

Query: 195 DTGNFAWGSECSTRKTRIIDV 257
           D+GNF+WGSE  ++KTRII V
Sbjct: 61  DSGNFSWGSEGVSKKTRIIQV 81


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 30.7 bits (66), Expect = 0.033
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
 Frame = +3

Query: 27   RDHWHKRRATGGKRAPIRKKRKY--ELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDT 200
            RD  +K +  G       K+ +   EL    +N  +  Q+  L+ S    T YRA+ LDT
Sbjct: 1083 RDRLYKSQLIGRVLDDTTKENRLLKELASSKSNITIRWQQGGLIGSGSFGTVYRAVNLDT 1142

Query: 201  GNFAWGSECSTRKTRI 248
            G+     E +  K RI
Sbjct: 1143 GDLMAVKEVALHKPRI 1158


>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 324

 Score = 27.5 bits (58), Expect = 0.31
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 117 WQPGDLTHTSSSYEWAHVC 61
           W PG      SS++W HVC
Sbjct: 278 WSPGKYDVFGSSHQWFHVC 296


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 30  DHWHKRRATGGKRAPIRKKRKYE 98
           D W   +A G   +PIR+ ++Y+
Sbjct: 758 DEWKASKAFGANDSPIRENKRYK 780


>SPAC13G7.06 |met16||phosphoadenosine phosphosulfate
           reductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 266

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
 Frame = -2

Query: 169 LPPRDLTKWMRWG-PSL 122
           L P+D+ KW RW  PSL
Sbjct: 32  LSPQDILKWCRWTLPSL 48


>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 207

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = +3

Query: 30  DHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNF 209
           + W K   T  K+    +KRK  L R A   +L  + +  + S+GG    +A + ++   
Sbjct: 32  EKWSKGVKTN-KKEQEAEKRKAALERKAERERLEKEEMESLPSKGGKGSKKAAKKNSSLD 90

Query: 210 AWGSE 224
           A+ +E
Sbjct: 91  AFLNE 95


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -2

Query: 211 AKFPVSRRRA-RYLVLPPRDLTKW 143
           AK P+ +RR  + L+L  RDLT W
Sbjct: 420 AKKPILKRRTPQELLLSGRDLTPW 443


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 215 PCEVSSIKTQGTIFSVTTTGSD 150
           P  V+SIK  GT FS    G+D
Sbjct: 768 PTAVASIKVSGTEFSTLLHGND 789


>SPBC530.01 |gyp1||GTPase activating protein Gyp1
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 24 SRDHWHKRRATGGKRAPIR 80
          SR H H+ R+T  K  P R
Sbjct: 35 SRTHHHRGRSTSSKAQPFR 53


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +3

Query: 12  KMGISRDHWHKRRATGGKRAPIRKKRKYELGRPAAN 119
           K G  +     RRA     A  RKK K + GRP +N
Sbjct: 6   KSGSKKSGQTSRRAIHSCLACRRKKLKCDHGRPCSN 41


>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 120 CWQPGDLTHTSSSY 79
           CW+P D   TS++Y
Sbjct: 501 CWRPADGNETSAAY 514


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 139 RWGPSLVLAAGRPNSYFLFLRMGARLPPVAL 47
           RW  + + +  RP    LF+R GARL P ++
Sbjct: 380 RWFLNGIASLARPK-VCLFVRNGARLGPTSI 409


>SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 203 SSIKTQGTIFSVTTTGSD*VDALGTK 126
           + + T GT  S T+TGS     +GT+
Sbjct: 308 NGVTTSGTTHSYTSTGSKRYSQMGTE 333


>SPAC16E8.17c |||succinate-CoA ligase alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 11/45 (24%), Positives = 20/45 (44%)
 Frame = +1

Query: 10  PRWVSVVIIGIRGGLRAANVRPFVRRGSMS*VARLPTLSLVPNAS 144
           P    +++IG  GG    +   F+R  + S     P +S +  A+
Sbjct: 232 PNTQGIILIGEIGGSAEEDAAEFIRAANASRSTPKPVVSFIAGAT 276


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -2

Query: 235 RVEHSDPHAKFPVSRR-RARYLVLPPRDLTKWMR 137
           R EH D H    +SR+ R   LV P  D  K ++
Sbjct: 552 RNEHEDYHIALSISRKERYNNLVPPSHDKPKQVK 585


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 223  SDPHAKFPVSRRRARYLVLPPRDLTK 146
            S+    +PVSR+  R+++ P + LTK
Sbjct: 1767 SEIDMNYPVSRKVVRHILKPLQLLTK 1792


>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
           Met11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 7/32 (21%), Positives = 14/32 (43%)
 Frame = -2

Query: 226 HSDPHAKFPVSRRRARYLVLPPRDLTKWMRWG 131
           H +P   +     ++ +L   P+D    + WG
Sbjct: 533 HDNPQVTYYAGNNKSEFLTNAPKDGASAVTWG 564


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,132,936
Number of Sequences: 5004
Number of extensions: 20544
Number of successful extensions: 55
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 51430850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)