Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_H18
(260 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 122 5e-29
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 121 7e-29
07_01_0467 - 3524598-3524837,3524939-3525466,3526242-3526892,352... 30 0.29
04_03_0182 - 12349072-12349149,12349459-12349656,12349746-123497... 29 0.39
11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861 29 0.51
02_04_0064 - 19375497-19375580,19375659-19375733,19376359-193765... 29 0.68
06_01_0913 - 7042230-7043332,7043420-7043621 28 1.2
06_03_1515 - 30707600-30707613,30708093-30708167,30708596-307086... 27 2.1
05_05_0137 - 22641577-22642119 27 2.1
04_04_1534 + 34200538-34200589,34200677-34200857,34201701-342018... 27 2.1
04_01_0368 + 4839043-4839483 26 4.8
10_08_0762 - 20410681-20411834,20411999-20412098,20412200-204122... 25 6.3
08_01_0716 - 6352433-6352730,6352797-6352978 25 6.3
06_03_0670 - 23336385-23336504,23336769-23337092,23338315-233383... 25 6.3
04_01_0379 - 5005811-5006449,5007068-5007121,5007516-5007584 25 6.3
03_02_0390 + 8056006-8057502 25 6.3
11_06_0746 + 26863538-26863716,26863881-26864168,26864268-26864580 25 8.4
08_02_0722 + 20416573-20416765,20417738-20417832,20418200-204183... 25 8.4
07_03_0409 + 17817046-17817126,17818320-17818523,17818744-178188... 25 8.4
06_03_0077 + 16284106-16284128,16284552-16284795,16285490-162855... 25 8.4
02_03_0321 - 17683766-17683834,17685085-17685150,17685568-176856... 25 8.4
02_01_0753 - 5586705-5586766,5587864-5588056,5588154-5588423,558... 25 8.4
>02_03_0270 +
17135464-17135467,17135583-17135655,17136253-17136583,
17136916-17136969,17137219-17137394,17137607-17137685
Length = 238
Score = 122 bits (293), Expect = 5e-29
Identities = 59/83 (71%), Positives = 66/83 (79%), Gaps = 1/83 (1%)
Frame = +3
Query: 15 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQR-IHLVRSRGGNTKYRALR 191
MGISRD HKRRATGGK+ RKKRKYELGR ANTKL + + VR RGGN K+RALR
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60
Query: 192 LDTGNFAWGSECSTRKTRIIDVV 260
LDTGN++WGSE TRKTRI+DVV
Sbjct: 61 LDTGNYSWGSEAVTRKTRILDVV 83
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 121 bits (292), Expect = 7e-29
Identities = 59/83 (71%), Positives = 66/83 (79%), Gaps = 1/83 (1%)
Frame = +3
Query: 15 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQR-IHLVRSRGGNTKYRALR 191
MGISRD HKRRATGGK+ RKKRKYELGR ANTKL + + VR RGGN K+RALR
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNLKWRALR 60
Query: 192 LDTGNFAWGSECSTRKTRIIDVV 260
LDTGN++WGSE TRKTRI+DVV
Sbjct: 61 LDTGNYSWGSEAVTRKTRILDVV 83
>07_01_0467 -
3524598-3524837,3524939-3525466,3526242-3526892,
3527015-3527500,3527580-3527792,3527885-3528174,
3528276-3528418,3528633-3528855,3528983-3529160,
3529598-3529867
Length = 1073
Score = 29.9 bits (64), Expect = 0.29
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Frame = +3
Query: 87 RKYELGRPAANTKLGPQRIHLVRSR----GGNTKYRALRLDTGN-FAWGS 221
R+ +LG P+ +T+ P+R+ +++R K+ A DTG F WGS
Sbjct: 271 REGQLGYPSVDTQPTPRRVSSLKARIISVAAANKHSAAVADTGEVFTWGS 320
>04_03_0182 -
12349072-12349149,12349459-12349656,12349746-12349750,
12349928-12350041,12350129-12350240,12350363-12350377
Length = 173
Score = 29.5 bits (63), Expect = 0.39
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -2
Query: 238 LRVEHSDPHAKFPVSRRRARYLVLPPRDLTKWMRWGPSLV 119
LRV H H + +R R + + P ++ K RWG ++
Sbjct: 16 LRVMHFSGHGDWTTNRDRPTFTLYPLQECYKLWRWGTQMI 55
>11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861
Length = 158
Score = 29.1 bits (62), Expect = 0.51
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +3
Query: 42 KRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTK 176
KRR GG+RA R+K + E GR A + R RGG +
Sbjct: 45 KRRRGGGRRAAGRRKEEEEAGRRKAGEEARRGAGKRKRRRGGGRR 89
Score = 29.1 bits (62), Expect = 0.51
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +3
Query: 42 KRRATGGKRAPIRKKRKYELGRPAANTKLGPQRI-HLVRSRGGNTKYRALR 191
KRR GG+RA R+K + E GR A + + R RGG + R R
Sbjct: 81 KRRRGGGRRAAGRRKEEEEAGRRKAGEETRRRGAGRRKRRRGGRRRRRRRR 131
Score = 27.9 bits (59), Expect = 1.2
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +3
Query: 42 KRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTK 176
+RR GG+RA R+K + E GR A + R RGG +
Sbjct: 9 RRRRGGGRRAAGRRKEEEEAGRRKAGEEARRGAGKRKRRRGGGRR 53
>02_04_0064 -
19375497-19375580,19375659-19375733,19376359-19376514,
19377016-19377093,19377328-19377428,19377570-19377717,
19378172-19378316,19378803-19378906,19380257-19380385,
19380526-19380636,19380734-19380863,19381915-19382034,
19382360-19382481,19382965-19383048,19383241-19383357,
19383442-19383522,19384138-19384197,19384398-19384440,
19384528-19384626,19385353-19385564,19385964-19386091,
19386246-19386396
Length = 825
Score = 28.7 bits (61), Expect = 0.68
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 117 WQPGDLTHTSSSYEWAHVCRP*PSSYANDHD 25
W+ GD+ HT ++ W+ C +YA HD
Sbjct: 570 WKMGDIVHTLTNRRWSEKC----VTYAESHD 596
>06_01_0913 - 7042230-7043332,7043420-7043621
Length = 434
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 202 PVSRRRARYLVLPPRDLTKWMRWGPSLVLAAGRPNSY 92
P +R+ R+ P +T + W P L +AAGRP ++
Sbjct: 180 PGTRKFWRW-AFPTHGVTVSVYWAPFLAMAAGRPENF 215
>06_03_1515 -
30707600-30707613,30708093-30708167,30708596-30708647,
30708751-30708831,30709145-30709219,30709870-30709977,
30710026-30710032,30710133-30710268,30710361-30710685
Length = 290
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -2
Query: 217 PHAKFPVSRRRARYLVLPPRDLTKWMRWGP 128
P +RRR R+ + PPR +RW P
Sbjct: 18 PSPAVAATRRRLRFPLAPPRPRPPPLRWSP 47
>05_05_0137 - 22641577-22642119
Length = 180
Score = 27.1 bits (57), Expect = 2.1
Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Frame = -2
Query: 217 PHAKFPVSRR-------RARYLVLPPRDLTKWMRWGPSLVLAAGRPNSYFLFLRMGARLP 59
PHA +S R R R +PP LT G L + P S LFLR GAR
Sbjct: 27 PHAALAISHRGKSCVRARGRRGRIPPAPLTA----GHESCLVSAVPLSGTLFLRSGAREL 82
Query: 58 PVA 50
P+A
Sbjct: 83 PLA 85
>04_04_1534 +
34200538-34200589,34200677-34200857,34201701-34201842,
34201963-34202032,34202169-34202302
Length = 192
Score = 27.1 bits (57), Expect = 2.1
Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = -2
Query: 157 DLTKWMRWGPSLVLAAGRPNSYFLFLRMGARLPPV---ALLL 41
DL W R S AG +FLF R G P V ALLL
Sbjct: 20 DLVLWRRRNVSAAAVAGATAVWFLFERAGYSFPSVMANALLL 61
>04_01_0368 + 4839043-4839483
Length = 146
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 6 RAKMGISRDHWHKRRATGGKRA 71
R G+ D WH+RRA +RA
Sbjct: 106 RMSGGVGADQWHQRRAGSCQRA 127
>10_08_0762 -
20410681-20411834,20411999-20412098,20412200-20412298,
20412563-20414133,20415080-20415128
Length = 990
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +3
Query: 39 HKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSR 161
H+ G PI++ + + R + N+K+ P + V+SR
Sbjct: 211 HRAARCFGNGRPIQESSEMKYDRGSFNSKVSPSEVGYVQSR 251
>08_01_0716 - 6352433-6352730,6352797-6352978
Length = 159
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 123 KLGPQRIHLVRSRGGNTKYRALRLDTGNFAWGSECSTRKT 242
+LG R+ RGG ++ +R D A CS+RKT
Sbjct: 14 RLGWGRVQQRNCRGGPCEHVGVRADEQATATAVVCSSRKT 53
>06_03_0670 -
23336385-23336504,23336769-23337092,23338315-23338387,
23338715-23338761,23338955-23339104,23339409-23339474,
23339940-23340013,23340740-23341520,23341730-23342146,
23344001-23344003
Length = 684
Score = 25.4 bits (53), Expect = 6.3
Identities = 8/20 (40%), Positives = 10/20 (50%)
Frame = -3
Query: 132 DQA*CWQPGDLTHTSSSYEW 73
D + CW GD+ SY W
Sbjct: 73 DDSVCWAVGDILEAFDSYSW 92
>04_01_0379 - 5005811-5006449,5007068-5007121,5007516-5007584
Length = 253
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 18 GISRDHWHKRRATGGKRA 71
G+ D WH+RRA +RA
Sbjct: 4 GVGADQWHQRRAGSCQRA 21
>03_02_0390 + 8056006-8057502
Length = 498
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 80 TNGRTFAARSPPLMPMITTDTHLGPR 3
T TF+ARS +P ++ T L PR
Sbjct: 48 TTATTFSARSSLSLPSFSSSTSLSPR 73
>11_06_0746 + 26863538-26863716,26863881-26864168,26864268-26864580
Length = 259
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/26 (34%), Positives = 12/26 (46%)
Frame = -2
Query: 166 PPRDLTKWMRWGPSLVLAAGRPNSYF 89
PP D W R+G + A P Y+
Sbjct: 134 PPDDGYSWKRYGQKNIFGANYPRCYY 159
>08_02_0722 +
20416573-20416765,20417738-20417832,20418200-20418317,
20418494-20418510,20418601-20418663,20420145-20420219
Length = 186
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +3
Query: 162 GGNTKYRALRLDTGNFAWGSECSTRKTR 245
GG + R L LD WG+E R+ R
Sbjct: 20 GGGARRRVLLLDQERPLWGTEVRRRRRR 47
>07_03_0409 +
17817046-17817126,17818320-17818523,17818744-17818856,
17819446-17819491,17819741-17819787,17820250-17820325,
17820865-17820937,17821059-17821204,17821382-17821467,
17821734-17821873,17821944-17822083,17822171-17822221,
17823644-17823702,17823793-17823949,17824793-17824845,
17824936-17825034,17825876-17825990,17826075-17826197,
17826417-17826584
Length = 658
Score = 25.0 bits (52), Expect = 8.4
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -2
Query: 217 PHAKFPVSRRRARYLVLPPRDLTK 146
P+ K P + R Y ++P +D+T+
Sbjct: 353 PNLKIPYNNRLGFYFIVPQKDITE 376
>06_03_0077 +
16284106-16284128,16284552-16284795,16285490-16285591,
16286347-16287057
Length = 359
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 103 VARLPTLSLVPNAST*SDPVVVTLNIVPCVLILETS 210
V LP L L P+AS P +V ++ +LET+
Sbjct: 33 VTPLPVLPLAPSASRTKSPRLVLDHLAKAYRVLETT 68
>02_03_0321 -
17683766-17683834,17685085-17685150,17685568-17685633,
17685827-17685897,17688035-17688053,17688405-17688687,
17688775-17688945,17689060-17689431,17689629-17689669,
17690112-17690365,17691185-17691263,17691390-17691950
Length = 683
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 202 PVSRRRARYLVLPPRDLTKWMRWGPSLVLAAG 107
P++ + R + +PPR T+ +R P V AAG
Sbjct: 100 PMAPQPPRQMYVPPRPQTQIVRQVPRTVQAAG 131
>02_01_0753 -
5586705-5586766,5587864-5588056,5588154-5588423,
5588522-5588687,5589049-5589209,5590065-5590181,
5590269-5590549,5590750-5590833,5591100-5592542,
5593167-5593575
Length = 1061
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -2
Query: 226 HSDPHAKFPVSRRRARYLVL 167
HSDP+ + + RRRA+ V+
Sbjct: 41 HSDPYVRLQMGRRRAKTTVV 60
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,233,421
Number of Sequences: 37544
Number of extensions: 169190
Number of successful extensions: 481
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 14,793,348
effective HSP length: 65
effective length of database: 12,352,988
effective search space used: 259412748
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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