Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_H18
         (260 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...   168   8e-45
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   1.4  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    20   4.4  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    20   4.4  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    20   5.8  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    20   5.8  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score =  168 bits (409), Expect = 8e-45
 Identities = 75/82 (91%), Positives = 79/82 (96%)
 Frame = +3

Query: 15  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 194
           MGISRDHWHKRRATGGKR PIRKKRK+ELGRPAANTKLGPQRIH VR+RGGN KYRALRL
Sbjct: 1   MGISRDHWHKRRATGGKRKPIRKKRKFELGRPAANTKLGPQRIHTVRTRGGNKKYRALRL 60

Query: 195 DTGNFAWGSECSTRKTRIIDVV 260
           DTGNF+WGSEC+TRKTRIIDVV
Sbjct: 61  DTGNFSWGSECTTRKTRIIDVV 82


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 1.4
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 246 YESCGLNIQIPMRSFQYQD 190
           YE CGL  + PM SFQ  D
Sbjct: 653 YE-CGLRFEDPMISFQPGD 670


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 4.4
 Identities = 6/13 (46%), Positives = 7/13 (53%)
 Frame = +3

Query: 36  WHKRRATGGKRAP 74
           WH  +   GKR P
Sbjct: 148 WHPGKIVNGKRVP 160


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 4.4
 Identities = 6/13 (46%), Positives = 7/13 (53%)
 Frame = +3

Query: 36  WHKRRATGGKRAP 74
           WH  +   GKR P
Sbjct: 148 WHPGKIVNGKRVP 160


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 19.8 bits (39), Expect = 5.8
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -2

Query: 199 VSRRRARYLVLPPRDLTKWMR 137
           + RR +RY + PP+++    R
Sbjct: 116 IIRRNSRYPLRPPQEVISHYR 136


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 19.8 bits (39), Expect = 5.8
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -2

Query: 100 NSYFLFLRMGARLPPVALLLCQ*SRLIPILA 8
           +SY +F  MG+   P+ ++L    R+  ++A
Sbjct: 196 SSYVIFSAMGSFFLPMLVMLYVYGRISCVIA 226


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,982
Number of Sequences: 438
Number of extensions: 1375
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4762122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)