Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_H16
         (205 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   0.27 
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   1.9  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    20   2.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    19   4.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    19   4.5  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    19   5.9  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    19   5.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    19   7.8  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    19   7.8  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 0.27
 Identities = 14/53 (26%), Positives = 19/53 (35%)
 Frame = +2

Query: 47  RALLILAMVVCIGHVHSKSLLNLSCKQIKDFVNGHNYRRQLLAKGRGIRTPCC 205
           RA + +    C G V  +      CK  + F +G  Y    L   R  R   C
Sbjct: 399 RAFVRILCACCPGRVRRRYQPAFRCKPSQRFASGRYYSAYSLHHVRSSRESSC 451


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 20.6 bits (41), Expect = 1.9
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 101 SLLNLSCKQIKDFVNGHNYRR 163
           S L+ SC    ++ N +NY++
Sbjct: 305 SSLSNSCNYSNNYYNNNNYKK 325


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 20.2 bits (40), Expect = 2.6
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -2

Query: 114 KFSRDLLWTCPIHTT 70
           +F RDL+WT  ++ +
Sbjct: 91  QFVRDLIWTPTVYVS 105


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.4 bits (38), Expect = 4.5
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 156 IGDNYWLRVEVSGHP 200
           +G N   R EVS HP
Sbjct: 344 LGGNAEFRCEVSTHP 358


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.4 bits (38), Expect = 4.5
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 156 IGDNYWLRVEVSGHP 200
           +G N   R EVS HP
Sbjct: 344 LGGNAEFRCEVSTHP 358


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 19.0 bits (37), Expect = 5.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 26  YN*TMAVRALLILAMVVCIGHV 91
           Y+ ++ V A  IL   +C GHV
Sbjct: 770 YDSSVDVYAFGILFWYLCAGHV 791


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 19.0 bits (37), Expect = 5.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 26  YN*TMAVRALLILAMVVCIGHV 91
           Y+ ++ V A  IL   +C GHV
Sbjct: 808 YDSSVDVYAFGILFWYLCAGHV 829


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 18.6 bits (36), Expect = 7.8
 Identities = 5/14 (35%), Positives = 7/14 (50%)
 Frame = +3

Query: 24  HTTEQWPYARFLFW 65
           H   +W    FL+W
Sbjct: 326 HEMSEWVKVVFLYW 339


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 18.6 bits (36), Expect = 7.8
 Identities = 6/23 (26%), Positives = 14/23 (60%)
 Frame = +2

Query: 80  IGHVHSKSLLNLSCKQIKDFVNG 148
           +G      +L++  + ++DF+NG
Sbjct: 77  VGQYGYDRVLSVLGRHVRDFLNG 99


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,757
Number of Sequences: 438
Number of extensions: 922
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  2785926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)