Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_H15
(270 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1069 - 24084393-24084410,24085232-24085387,24086485-240865... 29 0.67
07_03_1775 + 29431106-29431193,29431290-29431329,29431620-294320... 27 1.6
01_06_0472 - 29592383-29592457,29592720-29592840,29592971-295930... 27 2.1
11_06_0749 - 26887738-26887825,26888205-26888410,26888498-26888659 27 2.7
03_01_0455 + 3487354-3488090,3489172-3489255,3489942-3490554,349... 26 3.6
12_02_0134 - 14071190-14071435,14071800-14071988,14072114-140721... 25 6.3
12_02_0330 - 17612867-17613161,17613376-17613459,17613554-176137... 25 8.3
08_02_0967 - 23110154-23110240,23110620-23110673,23111010-231111... 25 8.3
05_02_0104 - 6638018-6638599,6639284-6639632,6641843-6642048 25 8.3
02_02_0646 + 12606569-12606582,12608702-12608750,12609387-126095... 25 8.3
01_06_1547 - 38150814-38151488,38151608-38151666,38151774-381519... 25 8.3
01_06_0729 - 31546464-31546574,31546653-31546694,31546795-315468... 25 8.3
>08_02_1069 -
24084393-24084410,24085232-24085387,24086485-24086560,
24086885-24086994
Length = 119
Score = 28.7 bits (61), Expect = 0.67
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +1
Query: 67 KCFVLFACVCLAHGAMVRRDAPNTIL--QDLEKHAQDFQKTISEQVISVVNSKNTESLNK 240
K ++L +CL HG R DA ++ QD K + SEQ N KNT+SL++
Sbjct: 11 KVYLLHVVICLLHGEWYREDAEFGLIRFQDDNKPLVLSESKNSEQ----ENLKNTKSLSQ 66
>07_03_1775 +
29431106-29431193,29431290-29431329,29431620-29432080,
29432173-29432363,29432503-29432635,29432839-29433428
Length = 500
Score = 27.5 bits (58), Expect = 1.6
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 51 HRHGLQVLRVVRLRMPRSRSDGP 119
H++G+ +L ++ R+P S SDGP
Sbjct: 388 HQYGIILLEILTGRVPYSESDGP 410
>01_06_0472 -
29592383-29592457,29592720-29592840,29592971-29593056,
29593224-29593310,29593493-29593573,29593656-29593803,
29593987-29594054,29594145-29594402
Length = 307
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 57 HGLQVLRVVRLRMPRSRSDGP 119
H L LR RLR PR+R+ GP
Sbjct: 9 HELLALRRPRLRTPRARASGP 29
>11_06_0749 - 26887738-26887825,26888205-26888410,26888498-26888659
Length = 151
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 139 ILQDLEKHAQDFQKTISEQVISVVNSKNTESLNKAL 246
++ + HA++ + IS Q+I + K ESLN L
Sbjct: 3 VVMKQQDHAEEEIEAISRQIIQARSRKTQESLNNLL 38
>03_01_0455 +
3487354-3488090,3489172-3489255,3489942-3490554,
3491356-3491583,3492270-3492437,3492828-3494587,
3494667-3494670
Length = 1197
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/26 (42%), Positives = 20/26 (76%)
Frame = +1
Query: 190 EQVISVVNSKNTESLNKALKEGSDSM 267
+Q IS+++++N S +A+K+G DSM
Sbjct: 444 QQEISMLDNENISSEAQAVKKGKDSM 469
>12_02_0134 -
14071190-14071435,14071800-14071988,14072114-14072194,
14072261-14072404,14072528-14072761,14072836-14073981,
14074863-14074922,14075178-14075420,14075509-14075607,
14076196-14076367,14076597-14076735,14077514-14077624,
14077695-14077797,14077885-14077962,14078054-14078122,
14078203-14078275,14078891-14078975,14079473-14079536,
14079963-14080073,14080139-14080213,14080306-14080398,
14080982-14081056,14081172-14081261
Length = 1259
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = +1
Query: 82 FACVCLAHGAMVRRDAPNTILQDLEKHAQDFQKTISEQVISVVN 213
FA CLA G + + +LQ ++H + S+ ++S ++
Sbjct: 443 FAVKCLAIGRKLLDTSEGPVLQSYDRHWSSLYELYSQILVSTID 486
>12_02_0330 -
17612867-17613161,17613376-17613459,17613554-17613744,
17614085-17614995,17615081-17615252,17615337-17615412,
17615515-17615634,17615841-17616005,17616096-17616186,
17616644-17616785,17616848-17617042,17617132-17617185,
17617299-17617397,17618181-17618296,17618376-17618442
Length = 925
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -2
Query: 200 ITCSLIVFWKSWACF 156
I+C L VF K W CF
Sbjct: 876 ISCPLFVFDKFWVCF 890
>08_02_0967 -
23110154-23110240,23110620-23110673,23111010-23111177,
23111432-23111534,23111664-23111988,23112091-23112181
Length = 275
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 192 TSYFSRQLKEHGELEQSAEGR 254
T+Y+ RQL H E S +GR
Sbjct: 118 TAYYLRQLHWHSPTEHSVDGR 138
>05_02_0104 - 6638018-6638599,6639284-6639632,6641843-6642048
Length = 378
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 172 FQKTISEQVISVVNSKNTESLNKALKEGS 258
F + Q+ISV+ S +T L +L++GS
Sbjct: 137 FGEHTDPQIISVLRSNDTSGLEISLRDGS 165
>02_02_0646 +
12606569-12606582,12608702-12608750,12609387-12609546,
12610372-12610519,12610610-12610687,12611935-12612019,
12612098-12612157
Length = 197
Score = 25.0 bits (52), Expect = 8.3
Identities = 19/73 (26%), Positives = 30/73 (41%)
Frame = +1
Query: 28 LRTRTDSDTAMACKCFVLFACVCLAHGAMVRRDAPNTILQDLEKHAQDFQKTISEQVISV 207
LR + TA+ +L + G ++ NTI + +A D SEQ IS
Sbjct: 123 LRGDVEKRTALENLDLILLCIDEIVDGGIILETDANTIAGKVATNAVDGSAPFSEQTISQ 182
Query: 208 VNSKNTESLNKAL 246
+ E L ++L
Sbjct: 183 ALATAREHLARSL 195
>01_06_1547 -
38150814-38151488,38151608-38151666,38151774-38151919,
38152078-38152274,38152542-38152920,38153000-38153031
Length = 495
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 109 AMVRRDAPNTILQDLEKHAQDFQKT 183
++V R + TIL L+KHA + KT
Sbjct: 465 SLVLRVSERTILHKLKKHASSWSKT 489
>01_06_0729 -
31546464-31546574,31546653-31546694,31546795-31546896,
31547148-31547246,31547522-31547582,31547659-31547807,
31547963-31548048,31548249-31548333,31548642-31548725,
31548820-31548893,31549035-31549095,31549546-31549614,
31549712-31549795,31549893-31549937
Length = 383
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -2
Query: 251 SFSALFKLSVFFELTTEITCSLIVFWKSWACF 156
+FSA L +F+E ++ +C +V+ W C+
Sbjct: 71 AFSAGGDLKMFYEGKSDDSCLEVVYRMYWLCY 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,888,441
Number of Sequences: 37544
Number of extensions: 88221
Number of successful extensions: 283
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 14,793,348
effective HSP length: 68
effective length of database: 12,240,356
effective search space used: 257047476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -