Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_H15
         (270 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY084135-1|AAL89873.1|  382|Drosophila melanogaster RE21313p pro...    29   1.2  
AE014296-3370|AAF51604.1|  382|Drosophila melanogaster CG5199-PA...    29   1.2  
AJ277789-1|CAB93525.1| 1738|Drosophila melanogaster mismatch dep...    27   3.6  
AE014135-90|AAF59338.1| 1738|Drosophila melanogaster CG1981-PA p...    27   3.6  
AY069698-1|AAL39843.1|  479|Drosophila melanogaster LD46817p pro...    26   6.3  
AE014298-1856|AAF48236.3|  506|Drosophila melanogaster CG12096-P...    26   6.3  

>AY084135-1|AAL89873.1|  382|Drosophila melanogaster RE21313p
           protein.
          Length = 382

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
 Frame = +1

Query: 16  LATSLRTRTDSDTAMACKCFVLFACVCLA---HGAMVRRDAPNTILQDLEKHAQDFQKTI 186
           +A++    + +  A+  +CF L AC C A   HG M         L+ LE++ +++ K  
Sbjct: 306 VASTPNWESHAHNAVRRQCFKLLACSCYAAIKHGGM---RLGQLRLETLERNLREWSKDY 362

Query: 187 SEQVISVVNS 216
            E V+S VN+
Sbjct: 363 -EDVLSCVNA 371


>AE014296-3370|AAF51604.1|  382|Drosophila melanogaster CG5199-PA
           protein.
          Length = 382

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
 Frame = +1

Query: 16  LATSLRTRTDSDTAMACKCFVLFACVCLA---HGAMVRRDAPNTILQDLEKHAQDFQKTI 186
           +A++    + +  A+  +CF L AC C A   HG M         L+ LE++ +++ K  
Sbjct: 306 VASTPNWESHAHNAVRRQCFKLLACSCYAAIKHGGM---RLGQLRLETLERNLREWSKDY 362

Query: 187 SEQVISVVNS 216
            E V+S VN+
Sbjct: 363 -EDVLSCVNA 371


>AJ277789-1|CAB93525.1| 1738|Drosophila melanogaster mismatch
           depedent uracil/thymineDNA glycosylase protein.
          Length = 1738

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 124 DAPNTILQDLEKHAQDFQKTISEQVISVVNSK 219
           D  +    ++EKH  D  K + E  IS+ NSK
Sbjct: 152 DTKSNKYSEMEKHLNDNSKIVIEGTISIGNSK 183


>AE014135-90|AAF59338.1| 1738|Drosophila melanogaster CG1981-PA
           protein.
          Length = 1738

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 124 DAPNTILQDLEKHAQDFQKTISEQVISVVNSK 219
           D  +    ++EKH  D  K + E  IS+ NSK
Sbjct: 152 DTKSNKYSEMEKHLNDNSKIVIEGTISIGNSK 183


>AY069698-1|AAL39843.1|  479|Drosophila melanogaster LD46817p
           protein.
          Length = 479

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = +1

Query: 94  CLAHGAMVR--RDAPNTILQDLEKHAQDFQKTISEQVISVVNSKNT 225
           C A GA      D  NT   DL+  A  F KTI +    +V  KNT
Sbjct: 366 CFAGGAHANIIMDLINTPFPDLQMAALSFLKTICKYNWGIVALKNT 411


>AE014298-1856|AAF48236.3|  506|Drosophila melanogaster CG12096-PA
           protein.
          Length = 506

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = +1

Query: 94  CLAHGAMVR--RDAPNTILQDLEKHAQDFQKTISEQVISVVNSKNT 225
           C A GA      D  NT   DL+  A  F KTI +    +V  KNT
Sbjct: 393 CFAGGAHANIIMDLINTPFPDLQMAALSFLKTICKYNWGIVALKNT 438


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,582,102
Number of Sequences: 53049
Number of extensions: 141288
Number of successful extensions: 435
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 24,988,368
effective HSP length: 68
effective length of database: 21,381,036
effective search space used: 449001756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)