Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_H14
         (412 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    27   1.1  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    26   2.6  
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    25   3.5  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   4.6  
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    25   6.1  
SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces...    24   8.0  
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    24   8.0  

>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +1

Query: 145 SAVSSQXXXXXXXXXXXXPCTMNPSARTVRSSSRHSWRPSGGTSEDSSRLS 297
           S+ SS             P T + S+ +  SSS  S + S  +S+ SSR S
Sbjct: 123 SSSSSLVSSTTSSSSSATPSTTSSSSSSSSSSSSSSSKSSSSSSKSSSRSS 173


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 29  RVFLSAPKKRKSFVIKKHSC 88
           RVFL A ++R  F++  HSC
Sbjct: 733 RVFLVANRERHPFLVNLHSC 752


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 9/22 (40%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = +3

Query: 282 LVKVKL-VPYGKSTHDKVNEKW 344
           L++++L + Y  S +D++NEKW
Sbjct: 776 LIRIELDIKYATSFYDELNEKW 797


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 15/77 (19%), Positives = 30/77 (38%)
 Frame = +1

Query: 145 SAVSSQXXXXXXXXXXXXPCTMNPSARTVRSSSRHSWRPSGGTSEDSSRLSWCLMERARM 324
           S VSS               +  P++ +  SSS  S + S  +   S+ +S      +  
Sbjct: 370 STVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHNSTS 429

Query: 325 TR*MKSGLSRAITDLTN 375
           +R      S +++ L++
Sbjct: 430 SRSSSHSSSHSLSSLSS 446


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 231 KKFITTQLAPVWRDFRGLVKVKLVPY 308
           K+ ITT +  VW  FR L+  + VPY
Sbjct: 183 KESITTAVRWVWHAFRILLITRGVPY 208


>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 338

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 249 QLAPVWRDFRGLV-KVKLVPYGKSTHDKVNEKWTFTCHH 362
           QL  + R   GLV KV LVPY  S+    ++ W    H+
Sbjct: 234 QLQLILRQTNGLVIKVFLVPYNVSSMVDCSKTWIRQKHY 272


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 296 LNLDESSEVPPDGRQLCRDELLTV 225
           L+LDE +  P DGR + +D  L V
Sbjct: 288 LHLDEGTICPADGRLITKDCFLQV 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,619,844
Number of Sequences: 5004
Number of extensions: 29214
Number of successful extensions: 71
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)