Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_H14
         (412 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0672 - 10325935-10326150,10326308-10326400,10326568-103267...    65   2e-11
01_06_1209 + 35427160-35427318,35427436-35427501,35427737-354278...    60   7e-10
03_02_0673 - 10328994-10329281                                         49   2e-06
05_01_0258 + 1984666-1984878,1985019-1985852                           30   0.63 
12_02_0763 + 22953749-22953884,22955036-22955199,22955695-229563...    28   2.5  
05_05_0203 - 23229538-23229720,23229808-23230007,23230087-232307...    27   7.7  

>03_02_0672 -
           10325935-10326150,10326308-10326400,10326568-10326708,
           10326828-10326893,10327099-10327359
          Length = 258

 Score = 64.9 bits (151), Expect = 2e-11
 Identities = 38/98 (38%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
 Frame = +3

Query: 120 LLICAVTMICGVLAKNKKTDDQKVKIALYYESLCPDSKKFITTQLAPVWRD-FRGLVKVK 296
           LL+ A+ ++     + KK    KV +ALYYESLCP S  F+   LA V+RD     V + 
Sbjct: 11  LLLAAILLLAAGAVEGKKGG--KVDVALYYESLCPYSAMFVVGSLAKVFRDGLLDAVDLS 68

Query: 297 LVPYGKSTHDKVNE-KWTFTCHHGPDECYGNKMQACIL 407
           LVPYG +   +V + K +    HG +EC+ N ++AC +
Sbjct: 69  LVPYGNA---RVKDGKISCQVEHGSEECFLNTVEACAI 103


>01_06_1209 +
           35427160-35427318,35427436-35427501,35427737-35427877,
           35428342-35428434,35428530-35428646,35428890-35429054
          Length = 246

 Score = 60.1 bits (139), Expect = 7e-10
 Identities = 26/73 (35%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
 Frame = +3

Query: 195 IALYYESLCPDSKKFITTQLAPVWRD-FRGLVKVKLVPYGKSTHDKVNEKWTFTCHHGPD 371
           +++YYE+LCP    F+   LA ++RD    +V ++LVP+G     +V+   + TC HG +
Sbjct: 1   MSVYYETLCPFCSGFVVNDLARIFRDGLSPVVDLRLVPFGNG---RVSPDGSITCQHGEE 57

Query: 372 ECYGNKMQACILK 410
           EC  N ++AC+++
Sbjct: 58  ECQLNAIEACVIR 70


>03_02_0673 - 10328994-10329281
          Length = 95

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
 Frame = +3

Query: 105 KMKLLLLICAVTMICGVLAKN---KKTDDQKVKIALYYESLCPDSKKFITTQLAPVWRD- 272
           ++ L+ L+ A  ++ G L           +KV +ALYYE+LCP   +FI   LA ++ D 
Sbjct: 8   RLLLVALVSAAAVVAGALLPGCAAAAAAGEKVPLALYYETLCPYCSRFIVNHLAGIFEDG 67

Query: 273 FRGLVKVKLVPYGKS 317
               V ++LVPYG +
Sbjct: 68  IVDAVDLRLVPYGNA 82


>05_01_0258 + 1984666-1984878,1985019-1985852
          Length = 348

 Score = 30.3 bits (65), Expect = 0.63
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = +3

Query: 114 LLLLICAVTMICGVLAKNKKTDDQKVKIALYYESLCPDSKKFITTQLAPVWRDFRG 281
           ++ L+C V ++    A      D+++K+  YYE  C D +K + + +    +D RG
Sbjct: 1   MVKLVCFVVVVFMAAAAAMAGADRELKVG-YYEKTCKDVEKIVNSIVVNSIKDNRG 55


>12_02_0763 +
           22953749-22953884,22955036-22955199,22955695-22956307,
           22968553-22968874,22969107-22969373,22969692-22970460
          Length = 756

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = -3

Query: 305 RHQLNLDESSEVPP---DGRQLCRDELLTVRAEG 213
           RH+   D SSE PP   DG  + RDE  T R  G
Sbjct: 175 RHRCRADPSSESPPATADGIYVPRDEAFTERRAG 208


>05_05_0203 -
           23229538-23229720,23229808-23230007,23230087-23230718,
           23231493-23231844,23231926-23232136,23232413-23232472
          Length = 545

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +3

Query: 60  KVL*LKNIRVHSYKYKMKLLLLICAVTMICGVLAKNKKTDDQKVKIALYYESLC 221
           K+L + NI+    +Y +K   +   V  I G    +   DD ++KI+  Y SLC
Sbjct: 318 KILDVNNIKSVPQQYILKRWTIDAKVLHISG---NSNMHDDPRIKISDRYSSLC 368


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,179,363
Number of Sequences: 37544
Number of extensions: 199082
Number of successful extensions: 525
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)