Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_H14
         (412 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    24   0.77 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   3.1  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          21   4.1  
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    21   5.4  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    21   5.4  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   7.2  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   7.2  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    20   9.5  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 23.8 bits (49), Expect = 0.77
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 252 LAPVWRDFRGLVKVKLVPYGKSTHDKV 332
           L  VW D++G+V  +L+P  ++ +  V
Sbjct: 189 LLSVWWDYKGIVYFELLPPNRTINSVV 215


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 32  VFLSAPKKRKSFVIKKHSCPLLQVQDEAIIIDMRCD 139
           V L A KK  S VI +HS  +  +++   I+D   D
Sbjct: 349 VALEAEKKNLSKVIDQHSQLIDTLENVLAIVDRLMD 384


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 261 VWRDFRGLVKVKLVPYGKSTHDKV 332
           VW D +G+V  +L+P  ++ +  V
Sbjct: 71  VWWDHKGIVYFELLPPNRTINSVV 94


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +3

Query: 276 RGLVKVKLVPYGKSTHDKVNEKWTFTCHHGPDECY 380
           + LV   L P       K  ++WTFT   G D  Y
Sbjct: 24  QNLVNTVLQPRPSFELSKNGDEWTFTSSSG-DNTY 57


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +3

Query: 276 RGLVKVKLVPYGKSTHDKVNEKWTFTCHHGPDECY 380
           + LV   L P       K  ++WTFT   G D  Y
Sbjct: 26  QNLVNTVLQPRPSFELSKNGDEWTFTSSSG-DNTY 59


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +3

Query: 252 LAPVWRDFRGLVKVKLVPYGKSTHDKV 332
           L  VW D++G+V  +L+   ++ +  V
Sbjct: 67  LLSVWWDYKGIVYFELLSPNRTINSVV 93


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = +3

Query: 141 MICGVLAKNKKTDDQ 185
           +ICG +++ +K DD+
Sbjct: 426 LICGSISEEQKFDDE 440


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +2

Query: 47  PKKRKSFVIKKHSCPLL 97
           P + ++F + + SCPL+
Sbjct: 163 PMELRNFPMDRQSCPLI 179


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,376
Number of Sequences: 438
Number of extensions: 2086
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)