Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_H12
         (278 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK160365-1|BAD18708.1| 1651|Homo sapiens FLJ00261 protein protein.     31   0.86 
U48250-1|AAC72247.1|  334|Homo sapiens protein kinase C-binding ...    30   1.1  
BC067364-1|AAH67364.1|  871|Homo sapiens PRP40 pre-mRNA processi...    30   1.1  
BC050398-1|AAH50398.1|  788|Homo sapiens PRPF40B protein protein.      30   1.1  
AK027117-1|BAB15662.1|  347|Homo sapiens protein ( Homo sapiens ...    30   1.1  
AF221520-1|AAF61215.1|  357|Homo sapiens basic helix-loop-helix ...    30   1.1  
AK127518-1|BAC87015.1|  178|Homo sapiens protein ( Homo sapiens ...    29   2.6  
X07732-1|CAA30558.1|  417|Homo sapiens hepsin protein.                 29   3.5  
X07002-1|CAA30058.1|  304|Homo sapiens hepsin protein.                 29   3.5  
M18930-1|AAA36013.1|  417|Homo sapiens protein ( Human hepsin mR...    29   3.5  
BC114220-1|AAI14221.1| 1703|Homo sapiens BCOR protein protein.         29   3.5  
BC030058-1|AAH30058.1|  676|Homo sapiens TTF2 protein protein.         29   3.5  
BC025716-1|AAH25716.1|  417|Homo sapiens hepsin (transmembrane p...    29   3.5  
AY316592-1|AAR08265.1| 1755|Homo sapiens BCL-6 corepressor long ...    29   3.5  
AL445231-3|CAH71961.1| 1162|Homo sapiens transcription terminati...    29   3.5  
AL391476-7|CAI12738.1| 1162|Homo sapiens transcription terminati...    29   3.5  
AK090449-1|BAC03430.1|  153|Homo sapiens FLJ00370 protein protein.     29   3.5  
AK074286-1|BAB85037.1| 1139|Homo sapiens protein ( Homo sapiens ...    29   3.5  
AF317391-1|AAG41429.1| 1721|Homo sapiens BCL-6 corepressor protein.    29   3.5  
AF080255-1|AAD49435.1| 1162|Homo sapiens lodestar protein protein.     29   3.5  
AF073771-1|AAC64044.1| 1162|Homo sapiens RNA polymerase II termi...    29   3.5  

>AK160365-1|BAD18708.1| 1651|Homo sapiens FLJ00261 protein protein.
          Length = 1651

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = -3

Query: 195  TVSYDQDHIRSPRAMDSQSISVTSPPR-ILLPDTLPQHLPSRSGGKA-VTALEQLTSGGG 22
            T    Q H+    A  S  I    PP  I+ P T P  LP +S G++  T    + SGG 
Sbjct: 870  TPDLPQPHLPPISAPGSSRIYRPLPPLPIIDPPTEPPPLPPKSRGRSRSTRGGHMNSGGH 929

Query: 21   SQHKPSC 1
            ++ +P+C
Sbjct: 930  AKTRPAC 936


>U48250-1|AAC72247.1|  334|Homo sapiens protein kinase C-binding
           protein RACK17 protein.
          Length = 334

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 23/56 (41%), Positives = 29/56 (51%)
 Frame = -3

Query: 171 IRSPRAMDSQSISVTSPPRILLPDTLPQHLPSRSGGKAVTALEQLTSGGGSQHKPS 4
           + SP AMDS +  V+S P    PD L   LP+RS G + +A    T G  S   PS
Sbjct: 6   LSSPGAMDSDASLVSSRPSSPEPDDL--FLPARSKGSSGSA---FTGGTVSSSTPS 56


>BC067364-1|AAH67364.1|  871|Homo sapiens PRP40 pre-mRNA processing
           factor 40 homolog B (S. cerevisiae) protein.
          Length = 871

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -3

Query: 174 HIRSPRAMDSQSISVTSPPRILLPDTLPQHLPSRSGGKAVTALEQLTSGGGS 19
           H RS     S+S     PP  L P    +  PS SG +  ++L+ + SGG +
Sbjct: 707 HKRSHSPSGSESEEEELPPPSLRPPKRRRRNPSESGSEPSSSLDSVESGGAA 758


>BC050398-1|AAH50398.1|  788|Homo sapiens PRPF40B protein protein.
          Length = 788

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -3

Query: 174 HIRSPRAMDSQSISVTSPPRILLPDTLPQHLPSRSGGKAVTALEQLTSGGGS 19
           H RS     S+S     PP  L P    +  PS SG +  ++L+ + SGG +
Sbjct: 706 HKRSHSPSGSESEEEELPPPSLRPPKRRRRNPSESGSEPSSSLDSVESGGAA 757


>AK027117-1|BAB15662.1|  347|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ23464 fis, clone HSI09275. ).
          Length = 347

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -3

Query: 174 HIRSPRAMDSQSISVTSPPRILLPDTLPQHLPSRSGGKAVTALEQLTSGGGS 19
           H RS     S+S     PP  L P    +  PS SG +  ++L+ + SGG +
Sbjct: 202 HKRSHSPSGSESEEEELPPPSLRPPKRRRRNPSESGSEPSSSLDSVESGGAA 253


>AF221520-1|AAF61215.1|  357|Homo sapiens basic helix-loop-helix
           protein class B 1 protein.
          Length = 357

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 23/56 (41%), Positives = 29/56 (51%)
 Frame = -3

Query: 171 IRSPRAMDSQSISVTSPPRILLPDTLPQHLPSRSGGKAVTALEQLTSGGGSQHKPS 4
           + SP AMDS +  V+S P    PD L   LP+RS G + +A    T G  S   PS
Sbjct: 29  LSSPGAMDSDASLVSSRPSSPEPDDL--FLPARSKGSSGSA---FTGGTVSSSTPS 79


>AK127518-1|BAC87015.1|  178|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45611 fis, clone BRTHA3024600. ).
          Length = 178

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = -3

Query: 129 TSPPRILLPDTLPQHLPSRSGGKAVTALEQLTSGGGSQHK 10
           T  P    P T P+  P RSGG+A  A   L  GG S  +
Sbjct: 51  TRRPSARQPPTAPRGGPQRSGGRAPAAPTTLWRGGRSTRR 90


>X07732-1|CAA30558.1|  417|Homo sapiens hepsin protein.
          Length = 417

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +3

Query: 102 PVIKFSAVRSQRSTDYPWLVVIEYDLGHRTLLCGFSLISSKYV 230
           PV +    R      +PW V + YD  H   LCG SL+S  +V
Sbjct: 159 PVDRIVGGRDTSLGRWPWQVSLRYDGAH---LCGGSLLSGDWV 198


>X07002-1|CAA30058.1|  304|Homo sapiens hepsin protein.
          Length = 304

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +3

Query: 102 PVIKFSAVRSQRSTDYPWLVVIEYDLGHRTLLCGFSLISSKYV 230
           PV +    R      +PW V + YD  H   LCG SL+S  +V
Sbjct: 46  PVDRIVGGRDTSLGRWPWQVSLRYDGAH---LCGGSLLSGDWV 85


>M18930-1|AAA36013.1|  417|Homo sapiens protein ( Human hepsin mRNA,
           complete cds. ).
          Length = 417

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +3

Query: 102 PVIKFSAVRSQRSTDYPWLVVIEYDLGHRTLLCGFSLISSKYV 230
           PV +    R      +PW V + YD  H   LCG SL+S  +V
Sbjct: 159 PVDRIVGGRDTSLGRWPWQVSLRYDGAH---LCGGSLLSGDWV 198


>BC114220-1|AAI14221.1| 1703|Homo sapiens BCOR protein protein.
          Length = 1703

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 111  LLPDTLPQHLPSRSGGKAVTALEQLTSGGGSQHKPSC 1
            L P    Q LP  SG   + +L   ++GG  Q +PSC
Sbjct: 1223 LKPSDNEQGLPVFSGSPPMKSLSSTSAGGKKQAQPSC 1259


>BC030058-1|AAH30058.1|  676|Homo sapiens TTF2 protein protein.
          Length = 676

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -3

Query: 135 SVTSPPRILLPDTLPQHLPSRSGGKAVTALEQLTSGGGSQ 16
           + T PP ++ P  LP+      G   + +  Q+T+GG SQ
Sbjct: 482 TTTGPPHLVPPQPLPRRGTQPVGSLELKSACQVTAGGSSQ 521


>BC025716-1|AAH25716.1|  417|Homo sapiens hepsin (transmembrane
           protease, serine 1) protein.
          Length = 417

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +3

Query: 102 PVIKFSAVRSQRSTDYPWLVVIEYDLGHRTLLCGFSLISSKYV 230
           PV +    R      +PW V + YD  H   LCG SL+S  +V
Sbjct: 159 PVDRIVGGRDTSLGRWPWQVSLRYDGAH---LCGGSLLSGDWV 198


>AY316592-1|AAR08265.1| 1755|Homo sapiens BCL-6 corepressor long
            isoform protein.
          Length = 1755

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 111  LLPDTLPQHLPSRSGGKAVTALEQLTSGGGSQHKPSC 1
            L P    Q LP  SG   + +L   ++GG  Q +PSC
Sbjct: 1275 LKPSDNEQGLPVFSGSPPMKSLSSTSAGGKKQAQPSC 1311


>AL445231-3|CAH71961.1| 1162|Homo sapiens transcription termination
           factor, RNA polymerase II protein.
          Length = 1162

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -3

Query: 135 SVTSPPRILLPDTLPQHLPSRSGGKAVTALEQLTSGGGSQ 16
           + T PP ++ P  LP+      G   + +  Q+T+GG SQ
Sbjct: 482 TTTGPPHLVPPQPLPRRGTQPVGSLELKSACQVTAGGSSQ 521


>AL391476-7|CAI12738.1| 1162|Homo sapiens transcription termination
           factor, RNA polymerase II protein.
          Length = 1162

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -3

Query: 135 SVTSPPRILLPDTLPQHLPSRSGGKAVTALEQLTSGGGSQ 16
           + T PP ++ P  LP+      G   + +  Q+T+GG SQ
Sbjct: 482 TTTGPPHLVPPQPLPRRGTQPVGSLELKSACQVTAGGSSQ 521


>AK090449-1|BAC03430.1|  153|Homo sapiens FLJ00370 protein protein.
          Length = 153

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 126 SPPRILLPDTLPQHLPSRSGGKAVTALEQ 40
           SP R++L +++PQ LPS +G  +   L Q
Sbjct: 5   SPHRLVLVESIPQDLPSAAGSPSAQPLGQ 33


>AK074286-1|BAB85037.1| 1139|Homo sapiens protein ( Homo sapiens cDNA
            FLJ23706 fis, clone HEP11450, highly similar to Homo
            sapiens BCL-6 corepressor (BCOR) mRNA. ).
          Length = 1139

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 111  LLPDTLPQHLPSRSGGKAVTALEQLTSGGGSQHKPSC 1
            L P    Q LP  SG   + +L   ++GG  Q +PSC
Sbjct: 1007 LKPSDNEQGLPVFSGSPPMKSLSSTSAGGKKQAQPSC 1043


>AF317391-1|AAG41429.1| 1721|Homo sapiens BCL-6 corepressor protein.
          Length = 1721

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 111  LLPDTLPQHLPSRSGGKAVTALEQLTSGGGSQHKPSC 1
            L P    Q LP  SG   + +L   ++GG  Q +PSC
Sbjct: 1241 LKPSDNEQGLPVFSGSPPMKSLSSTSAGGKKQAQPSC 1277


>AF080255-1|AAD49435.1| 1162|Homo sapiens lodestar protein protein.
          Length = 1162

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -3

Query: 135 SVTSPPRILLPDTLPQHLPSRSGGKAVTALEQLTSGGGSQ 16
           + T PP ++ P  LP+      G   + +  Q+T+GG SQ
Sbjct: 482 TTTGPPHLVPPQPLPRRGTQPVGSLELKSACQVTAGGSSQ 521


>AF073771-1|AAC64044.1| 1162|Homo sapiens RNA polymerase II
           termination factor protein.
          Length = 1162

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -3

Query: 135 SVTSPPRILLPDTLPQHLPSRSGGKAVTALEQLTSGGGSQ 16
           + T PP ++ P  LP+      G   + +  Q+T+GG SQ
Sbjct: 482 TTTGPPHLVPPQPLPRRGTQPVGSLELKSACQVTAGGSSQ 521


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,526,109
Number of Sequences: 237096
Number of extensions: 859126
Number of successful extensions: 2371
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 2324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2371
length of database: 76,859,062
effective HSP length: 70
effective length of database: 60,262,342
effective search space used: 1325771524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)