Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_H12
(278 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL117195-17|CAB60767.1| 534|Caenorhabditis elegans Hypothetical... 31 0.16
U64845-12|AAC48025.1| 475|Caenorhabditis elegans Hypothetical p... 27 2.0
AL032657-2|CAA21738.1| 368|Caenorhabditis elegans Hypothetical ... 27 2.6
AF025453-12|AAK31405.1| 600|Caenorhabditis elegans Hypothetical... 27 2.6
U41032-3|AAO44917.1| 1237|Caenorhabditis elegans Protein kinase ... 26 3.5
U23513-5|AAP68948.1| 214|Caenorhabditis elegans Hypothetical pr... 26 3.5
U23513-4|AAP68947.1| 322|Caenorhabditis elegans Hypothetical pr... 26 3.5
Z75552-1|CAA99941.1| 920|Caenorhabditis elegans Hypothetical pr... 26 4.6
Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical pr... 26 4.6
U49449-1|AAB00117.1| 339|Caenorhabditis elegans olfactory recep... 26 4.6
U42830-6|AAC48279.2| 339|Caenorhabditis elegans Odorant respons... 26 4.6
AY273823-1|AAQ01772.1| 1040|Caenorhabditis elegans VAB-19 protein. 25 6.1
AC006688-1|AAF39969.3| 1040|Caenorhabditis elegans Variable abno... 25 6.1
Z79755-5|CAB02110.2| 244|Caenorhabditis elegans Hypothetical pr... 25 8.0
AJ276028-1|CAC81655.1| 816|Caenorhabditis elegans TRP homlogous... 25 8.0
AF040654-5|AAN65302.2| 816|Caenorhabditis elegans Trp (transien... 25 8.0
AF040654-4|AAN65303.2| 886|Caenorhabditis elegans Trp (transien... 25 8.0
AF038615-5|AAB94142.1| 934|Caenorhabditis elegans Hypothetical ... 25 8.0
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ... 25 8.0
AF026212-4|AAF99973.2| 386|Caenorhabditis elegans Hypothetical ... 25 8.0
>AL117195-17|CAB60767.1| 534|Caenorhabditis elegans Hypothetical
protein Y57A10A.24 protein.
Length = 534
Score = 30.7 bits (66), Expect = 0.16
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Frame = +2
Query: 2 HEGLCCDPPPEVN--CSRAVTAFP--PERDGKC 88
H G+CC PPP+ R T FP P+R C
Sbjct: 71 HRGICCVPPPQCRHPAYRMSTGFPCLPKRKNNC 103
>U64845-12|AAC48025.1| 475|Caenorhabditis elegans Hypothetical
protein F45F2.1 protein.
Length = 475
Score = 27.1 bits (57), Expect = 2.0
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = -1
Query: 176 IIFDHHEPWIV 144
I+FDHH PW++
Sbjct: 105 IVFDHHSPWVM 115
>AL032657-2|CAA21738.1| 368|Caenorhabditis elegans Hypothetical
protein Y47H9C.2 protein.
Length = 368
Score = 26.6 bits (56), Expect = 2.6
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -1
Query: 191 CPMTKIIFDHHEPWIVSRSL*PHRREFYYRTLFHSTCHRVLV 66
C ++FDHH PW V + ++YR +F C +LV
Sbjct: 183 CDNCVLMFDHHCPW-VGNCIGLRNYTYFYRFVF---CLSILV 220
>AF025453-12|AAK31405.1| 600|Caenorhabditis elegans Hypothetical
protein C08F1.8 protein.
Length = 600
Score = 26.6 bits (56), Expect = 2.6
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -2
Query: 142 VDLCDLTAENFITGHSSTALAIAFWWESCDSSRAV 38
+ LC + ++ I H + +AF WE D +AV
Sbjct: 351 ITLCKVCKQHTIKSHFNIRYYLAFAWEGTDQWKAV 385
>U41032-3|AAO44917.1| 1237|Caenorhabditis elegans Protein kinase
protein 25, isoforma protein.
Length = 1237
Score = 26.2 bits (55), Expect = 3.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -3
Query: 72 SGGKAVTALEQLTSGGGSQHKPS 4
SG + + + E LT+GG S H+P+
Sbjct: 523 SGAEIIASKELLTNGGRSTHQPA 545
>U23513-5|AAP68948.1| 214|Caenorhabditis elegans Hypothetical
protein D2021.2b protein.
Length = 214
Score = 26.2 bits (55), Expect = 3.5
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = -1
Query: 230 YILRTDERKTA*QCPMTKIIFDHHEPWIVSRSL*PHRREF 111
+I + D K C FDHH PW+ S + REF
Sbjct: 54 FIRKMDHTKHCAVCGFCVNNFDHHCPWLNSCVTRRNMREF 93
>U23513-4|AAP68947.1| 322|Caenorhabditis elegans Hypothetical
protein D2021.2a protein.
Length = 322
Score = 26.2 bits (55), Expect = 3.5
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = -1
Query: 230 YILRTDERKTA*QCPMTKIIFDHHEPWIVSRSL*PHRREF 111
+I + D K C FDHH PW+ S + REF
Sbjct: 162 FIRKMDHTKHCAVCGFCVNNFDHHCPWLNSCVTRRNMREF 201
>Z75552-1|CAA99941.1| 920|Caenorhabditis elegans Hypothetical
protein W04D2.1a protein.
Length = 920
Score = 25.8 bits (54), Expect = 4.6
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Frame = +2
Query: 20 DPPPEV----NCSRAVTAFPPERDGKCCGRVSGNKI 115
DPPP V R V A PPERD + + N+I
Sbjct: 258 DPPPPVIRQPPPQRVVVAPPPERDWRKDAETAANRI 293
>Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical
protein K04H4.2c protein.
Length = 1446
Score = 25.8 bits (54), Expect = 4.6
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = +2
Query: 5 EGLCCDPPPEVNCSRAVTA 61
+G+CC PP+ C + A
Sbjct: 468 DGICCKQPPKARCGNGLMA 486
>U49449-1|AAB00117.1| 339|Caenorhabditis elegans olfactory receptor
Odr-10 protein.
Length = 339
Score = 25.8 bits (54), Expect = 4.6
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -1
Query: 263 TLPVTQCAPVSYILRTDERKTA*QCPMTKIIFDHHEPWI 147
++PVT A VSY L D T + +T ++ +H+ WI
Sbjct: 140 SVPVTMWASVSYFLYPDTEYT--EAAVTNVLNNHYN-WI 175
>U42830-6|AAC48279.2| 339|Caenorhabditis elegans Odorant response
abnormal protein10 protein.
Length = 339
Score = 25.8 bits (54), Expect = 4.6
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -1
Query: 263 TLPVTQCAPVSYILRTDERKTA*QCPMTKIIFDHHEPWI 147
++PVT A VSY L D T + +T ++ +H+ WI
Sbjct: 140 SVPVTMWASVSYFLYPDTEYT--EAAVTNVLNNHYN-WI 175
>AY273823-1|AAQ01772.1| 1040|Caenorhabditis elegans VAB-19 protein.
Length = 1040
Score = 25.4 bits (53), Expect = 6.1
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -3
Query: 123 PPRILLPDTLPQHLPSRSGGK-AVTALEQ 40
PP+ +LPD +P +P K AVT+ E+
Sbjct: 673 PPKQMLPDPIPARIPRPKISKWAVTSEEE 701
>AC006688-1|AAF39969.3| 1040|Caenorhabditis elegans Variable
abnormal morphology protein19 protein.
Length = 1040
Score = 25.4 bits (53), Expect = 6.1
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -3
Query: 123 PPRILLPDTLPQHLPSRSGGK-AVTALEQ 40
PP+ +LPD +P +P K AVT+ E+
Sbjct: 673 PPKQMLPDPIPARIPRPKISKWAVTSEEE 701
>Z79755-5|CAB02110.2| 244|Caenorhabditis elegans Hypothetical
protein F43G9.8 protein.
Length = 244
Score = 25.0 bits (52), Expect = 8.0
Identities = 14/58 (24%), Positives = 24/58 (41%)
Frame = -3
Query: 201 RITVSYDQDHIRSPRAMDSQSISVTSPPRILLPDTLPQHLPSRSGGKAVTALEQLTSG 28
RI +S + ++R + M Q PP +LP P H +++ V + G
Sbjct: 67 RIYMSIHRKNMRKKKMMKLQQTKQEDPPSAVLPS--PSHFTTQTSTNTVEDANMVLEG 122
>AJ276028-1|CAC81655.1| 816|Caenorhabditis elegans TRP homlogous
cation channel proteinprotein.
Length = 816
Score = 25.0 bits (52), Expect = 8.0
Identities = 9/36 (25%), Positives = 19/36 (52%)
Frame = -2
Query: 127 LTAENFITGHSSTALAIAFWWESCDSSRAVNFRWRI 20
L+ + F+ + L + W+E +S R NF +++
Sbjct: 300 LSQKRFVAHPNCQQLLLDIWYEGVESVRCTNFIYKL 335
>AF040654-5|AAN65302.2| 816|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 2, isoform a
protein.
Length = 816
Score = 25.0 bits (52), Expect = 8.0
Identities = 9/36 (25%), Positives = 19/36 (52%)
Frame = -2
Query: 127 LTAENFITGHSSTALAIAFWWESCDSSRAVNFRWRI 20
L+ + F+ + L + W+E +S R NF +++
Sbjct: 300 LSQKRFVAHPNCQQLLLDIWYEGVESVRCTNFIYKL 335
>AF040654-4|AAN65303.2| 886|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 2, isoform b
protein.
Length = 886
Score = 25.0 bits (52), Expect = 8.0
Identities = 9/36 (25%), Positives = 19/36 (52%)
Frame = -2
Query: 127 LTAENFITGHSSTALAIAFWWESCDSSRAVNFRWRI 20
L+ + F+ + L + W+E +S R NF +++
Sbjct: 300 LSQKRFVAHPNCQQLLLDIWYEGVESVRCTNFIYKL 335
>AF038615-5|AAB94142.1| 934|Caenorhabditis elegans Hypothetical
protein R02D3.1 protein.
Length = 934
Score = 25.0 bits (52), Expect = 8.0
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 111 LLPDTLPQHLPSRSGGKAVTALEQL 37
+ PD+L + + GGK ++ALE L
Sbjct: 785 IFPDSLRHIIEEKVGGKGLSALENL 809
>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
protein C08G9.2 protein.
Length = 2224
Score = 25.0 bits (52), Expect = 8.0
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 8 GLCCDPPPEVNCSRAVTAFPPERDGKCCGRVS 103
G+CC PP V + + P D K C RVS
Sbjct: 725 GMCCLSPPLVRHAGSCPIVPISLDAKMC-RVS 755
>AF026212-4|AAF99973.2| 386|Caenorhabditis elegans Hypothetical
protein F52G3.5 protein.
Length = 386
Score = 25.0 bits (52), Expect = 8.0
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +2
Query: 5 EGLCCDPPPEVNCSRAVT 58
EG CC P++NC+ +T
Sbjct: 292 EGQCCILTPQINCTDVLT 309
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,850,325
Number of Sequences: 27780
Number of extensions: 131144
Number of successful extensions: 428
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 248937694
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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