Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_H11
         (194 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0421 - 22756903-22757384,22757585-22758047                       27   2.8  
12_01_0151 - 1158834-1159703,1159917-1160092,1160144-1162097,116...    26   3.7  
06_01_1171 - 10007714-10009141                                         26   3.7  
11_06_0193 - 21132793-21132986,21133376-21133504,21133648-21133681     25   6.4  

>02_04_0421 - 22756903-22757384,22757585-22758047
          Length = 314

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 91  RITKTMAVIIYRILKTLHTLVPNYCSPGDP 2
           R + T+++   R+L  +H L  N   P DP
Sbjct: 65  RSSSTVSIYFNRVLNAMHVLAGNILKPVDP 94


>12_01_0151 -
           1158834-1159703,1159917-1160092,1160144-1162097,
           1162360-1162620,1162729-1162916,1164127-1164166
          Length = 1162

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = +2

Query: 14  AAIIRHEG-VQCLKNSI--NYNCHRFCNTSYLNYIANVNSFKVHKIEKI 151
           AAI+   G V  + N+I  ++N H+    S  + + NV+  K+H +E I
Sbjct: 120 AAIVEQRGDVNTILNAIPIDHNVHKNKIISEPSLLGNVDDSKIHMVEAI 168


>06_01_1171 - 10007714-10009141
          Length = 475

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +2

Query: 2   WIPRAAIIRHEGVQCLKNSINYN 70
           W P+ A++RH  V C      +N
Sbjct: 347 WAPQTAVLRHRAVGCFVTHCGWN 369


>11_06_0193 -
          21132793-21132986,21133376-21133504,21133648-21133681
          Length = 118

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 29 HEGVQCLKNSINYNCHRFCN 88
          H+G Q L N  +Y C+R C+
Sbjct: 37 HDGFQNLLNDTSYPCYRQCS 56


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,029,083
Number of Sequences: 37544
Number of extensions: 73349
Number of successful extensions: 164
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 14,793,348
effective HSP length: 44
effective length of database: 13,141,412
effective search space used: 262828240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)