Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_H10
         (197 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S...    43   5e-06
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc...    43   5e-06
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|...    39   1e-04
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    24   2.4  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    23   4.2  
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe...    22   9.7  

>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
           Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 43.2 bits (97), Expect = 5e-06
 Identities = 20/38 (52%), Positives = 28/38 (73%)
 Frame = +3

Query: 84  SKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVE 197
           S +ELA  YSALIL D+ + +T +K+ ++ KAA VDVE
Sbjct: 2   SASELATSYSALILADEGIEITSDKLLSLTKAANVDVE 39


>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
           Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 43.2 bits (97), Expect = 5e-06
 Identities = 20/38 (52%), Positives = 28/38 (73%)
 Frame = +3

Query: 84  SKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVE 197
           S +ELA  YSALIL D+ + +T +K+ ++ KAA VDVE
Sbjct: 2   SASELATSYSALILADEGIEITSDKLLSLTKAANVDVE 39


>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
           Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 109

 Score = 38.7 bits (86), Expect = 1e-04
 Identities = 17/38 (44%), Positives = 27/38 (71%)
 Frame = +3

Query: 84  SKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVE 197
           S +ELA  Y+ALIL D+ + +T +K+ ++ KA  V+VE
Sbjct: 2   SASELATSYAALILADEGIEITSDKLLSLTKAGNVEVE 39


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 196 STSTAAAFSMVEIFSPVTATSSSTRI 119
           +TST+  ++   I SP + +SSST++
Sbjct: 592 TTSTSVLYTSTPITSPNSTSSSSTQV 617


>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 48   FWRLARITFKMASKAELACVYSALILVDDDVAVTGEKISTIL 173
            FW ++     M S ++ +C Y++   V+D  A T  K   IL
Sbjct: 981  FWNVSDTLKNMFSTSDFSCAYNS---VEDLYAFTSMKSKEIL 1019


>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 565

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 185 SSRFQYG*DFLTGNGDIVIYQDKGGVNTS 99
           +++F +G   +T N D  I+  K G+N S
Sbjct: 74  TTQFTFGKPAVTANNDSDIHLKKRGLNKS 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 706,444
Number of Sequences: 5004
Number of extensions: 9965
Number of successful extensions: 21
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 2,362,478
effective HSP length: 45
effective length of database: 2,137,298
effective search space used: 42745960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)