Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_H10
         (197 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0113 + 897970-898038,898148-898271,898811-898896,898996-89...    46   6e-06
07_03_0260 + 15928932-15929255,15930174-15930347                       27   2.1  
06_02_0046 + 10928708-10928798,10929997-10930077,10930567-109306...    26   3.7  
07_03_0587 + 19708841-19709282,19709693-19709883,19710429-197105...    25   6.4  
03_05_0905 - 28665838-28666422,28667073-28667156,28667335-286674...    25   6.4  
02_02_0220 - 7992124-7992351,7992458-7992562,7993499-7993711,799...    25   6.4  
03_02_0295 + 7178921-7179451,7180083-7180448,7181316-7181450,718...    25   8.5  

>08_01_0113 +
           897970-898038,898148-898271,898811-898896,898996-899049
          Length = 110

 Score = 45.6 bits (103), Expect = 6e-06
 Identities = 20/38 (52%), Positives = 29/38 (76%)
 Frame = +3

Query: 84  SKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVE 197
           S +E+AC  +ALIL DD + +T EKI+T++KAA + VE
Sbjct: 2   SSSEVACTLAALILHDDGIPITSEKIATLVKAANIKVE 39


>07_03_0260 + 15928932-15929255,15930174-15930347
          Length = 165

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -3

Query: 117 GRSKHKLIQLLMPF*MLYVQVAKR 46
           GR+ HKL+Q+ +PF +L V  A R
Sbjct: 119 GRATHKLLQMYVPFAVLAVIAALR 142


>06_02_0046 +
           10928708-10928798,10929997-10930077,10930567-10930685,
           10931275-10931894,10931992-10933184,10933280-10933359,
           10933751-10933846,10933931-10934004,10936007-10936151,
           10936323-10936487
          Length = 887

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/51 (29%), Positives = 29/51 (56%)
 Frame = -2

Query: 169 MVEIFSPVTATSSSTRIRAE*TQANSAFDAILNVIRASRQKALAQGEQARS 17
           +  +  PV ATS+S  I+    QA+++  +   V+R S+++A++     RS
Sbjct: 669 LASLSQPVGATSASASIQGSSAQASTSTTSQSKVVR-SKKRAVSVATSLRS 718


>07_03_0587 +
           19708841-19709282,19709693-19709883,19710429-19710568,
           19710955-19711380,19711540-19712685,19712805-19712934,
           19713257-19713492,19713575-19713710,19713793-19713869,
           19714692-19714798,19714896-19714996
          Length = 1043

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +3

Query: 84  SKAELACVYSALILVDDDVAVTG 152
           S ++  CV S+ +++DDD+ + G
Sbjct: 544 SLSQCLCVRSSSVIIDDDLVIVG 566


>03_05_0905 -
           28665838-28666422,28667073-28667156,28667335-28667410,
           28667497-28667600,28668673-28668735,28669312-28669317
          Length = 305

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 54  RLARITFKMASKAELACVYSALILVDDDVAVT 149
           +LA +TFK +  A+ A + S   +VD  V +T
Sbjct: 64  QLAYVTFKDSQGADTAVLLSGATIVDRSVIIT 95


>02_02_0220 -
           7992124-7992351,7992458-7992562,7993499-7993711,
           7993937-7994196,7994425-7994701,7995226-7995371,
           7995519-7995903,7996680-7996964
          Length = 632

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +3

Query: 54  RLARITFKMASKAELACVYSALILVDDDVAVTGEKIST 167
           +LA+I     +K +     S  +L+ +DVA+TG+ ++T
Sbjct: 252 KLAQIFQSSVAKKKAVGKKSKALLLGEDVAITGDCVTT 289


>03_02_0295 +
           7178921-7179451,7180083-7180448,7181316-7181450,
           7181533-7181606,7181960-7181999,7182178-7182223,
           7182398-7182477,7182585-7182760,7182848-7182973,
           7183338-7183430,7184135-7184260,7184815-7184884,
           7185262-7185344,7186216-7186329,7186884-7186983,
           7187557-7187583
          Length = 728

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +3

Query: 57  LARITFKMASKAELACVYSALILVDDDVAVTGEKISTILKA 179
           LAR  +K A KA+  C Y AL  + D+  +T E+ S +L +
Sbjct: 365 LARQWYKAAVKADPLC-YEALECLVDNYMLTCEEESELLSS 404


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,865,005
Number of Sequences: 37544
Number of extensions: 73522
Number of successful extensions: 136
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 14,793,348
effective HSP length: 45
effective length of database: 13,103,868
effective search space used: 262077360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)