Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_H10
         (197 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M17886-1|AAA36471.1|  114|Homo sapiens protein ( Human acidic ri...    56   2e-08
BC007590-1|AAH07590.1|  114|Homo sapiens ribosomal protein, larg...    56   2e-08
BC003369-1|AAH03369.1|  114|Homo sapiens ribosomal protein, larg...    56   2e-08
AY303789-1|AAP68820.1|  113|Homo sapiens acidic ribosomal phosph...    56   2e-08
AB061836-1|BAB79474.1|  114|Homo sapiens ribosomal protein P1 pr...    56   2e-08
CR450339-1|CAG29335.1|  114|Homo sapiens RPLP1 protein.                56   3e-08
CR542209-1|CAG47005.1|  114|Homo sapiens RPLP1 protein.                51   6e-07

>M17886-1|AAA36471.1|  114|Homo sapiens protein ( Human acidic
           ribosomal phosphoprotein P1 mRNA, complete cds. ).
          Length = 114

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 26/40 (65%), Positives = 34/40 (85%)
 Frame = +3

Query: 78  MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVE 197
           MAS +ELAC+YSALIL DD+V VT +KI+ ++KAA V+VE
Sbjct: 1   MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVE 40


>BC007590-1|AAH07590.1|  114|Homo sapiens ribosomal protein, large,
           P1 protein.
          Length = 114

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 26/40 (65%), Positives = 34/40 (85%)
 Frame = +3

Query: 78  MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVE 197
           MAS +ELAC+YSALIL DD+V VT +KI+ ++KAA V+VE
Sbjct: 1   MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVE 40


>BC003369-1|AAH03369.1|  114|Homo sapiens ribosomal protein, large,
           P1 protein.
          Length = 114

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 26/40 (65%), Positives = 34/40 (85%)
 Frame = +3

Query: 78  MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVE 197
           MAS +ELAC+YSALIL DD+V VT +KI+ ++KAA V+VE
Sbjct: 1   MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVE 40


>AY303789-1|AAP68820.1|  113|Homo sapiens acidic ribosomal
           phosphoprotein P1 protein.
          Length = 113

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 26/40 (65%), Positives = 34/40 (85%)
 Frame = +3

Query: 78  MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVE 197
           MAS +ELAC+YSALIL DD+V VT +KI+ ++KAA V+VE
Sbjct: 1   MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVE 40


>AB061836-1|BAB79474.1|  114|Homo sapiens ribosomal protein P1
           protein.
          Length = 114

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 26/40 (65%), Positives = 34/40 (85%)
 Frame = +3

Query: 78  MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVE 197
           MAS +ELAC+YSALIL DD+V VT +KI+ ++KAA V+VE
Sbjct: 1   MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVE 40


>CR450339-1|CAG29335.1|  114|Homo sapiens RPLP1 protein.
          Length = 114

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 25/40 (62%), Positives = 34/40 (85%)
 Frame = +3

Query: 78  MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVE 197
           MAS +ELAC+YSAL+L DD+V VT +KI+ ++KAA V+VE
Sbjct: 1   MASVSELACIYSALVLHDDEVTVTEDKINALIKAAGVNVE 40


>CR542209-1|CAG47005.1|  114|Homo sapiens RPLP1 protein.
          Length = 114

 Score = 51.2 bits (117), Expect = 6e-07
 Identities = 25/40 (62%), Positives = 33/40 (82%)
 Frame = +3

Query: 78  MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVE 197
           MAS +ELA +YSALIL DD+V VT +KI+ ++KAA V+VE
Sbjct: 1   MASVSELARIYSALILHDDEVTVTEDKINALIKAAGVNVE 40


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,391,206
Number of Sequences: 237096
Number of extensions: 395551
Number of successful extensions: 491
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 76,859,062
effective HSP length: 44
effective length of database: 66,426,838
effective search space used: 1394963598
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)