Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_H10
         (197 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal prote...    62   7e-11
AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal pro...    62   7e-11
Z75955-6|CAB00120.1|  451|Caenorhabditis elegans Hypothetical pr...    26   3.2  
Z78239-3|CAI79143.1|  309|Caenorhabditis elegans Hypothetical pr...    26   4.2  
Z81517-8|CAM84818.1|  357|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr...    25   7.4  
AF101307-3|AAC69212.2|  315|Caenorhabditis elegans Hypothetical ...    25   9.8  

>U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal protein
           P1 homolog protein.
          Length = 111

 Score = 61.7 bits (143), Expect = 7e-11
 Identities = 29/40 (72%), Positives = 35/40 (87%)
 Frame = +3

Query: 78  MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVE 197
           MAS  ELACVY+ALIL DD+VA+TGEKI+T+LKAA V+ E
Sbjct: 1   MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFE 40


>AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal
           protein, acidic protein 1 protein.
          Length = 111

 Score = 61.7 bits (143), Expect = 7e-11
 Identities = 29/40 (72%), Positives = 35/40 (87%)
 Frame = +3

Query: 78  MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVE 197
           MAS  ELACVY+ALIL DD+VA+TGEKI+T+LKAA V+ E
Sbjct: 1   MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFE 40


>Z75955-6|CAB00120.1|  451|Caenorhabditis elegans Hypothetical
           protein R07B7.11 protein.
          Length = 451

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/38 (28%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +3

Query: 66  ITFKMA-SKAELACVYSALILVDDDVAVTGEKISTILK 176
           IT  M+ S+  + C++SA +++ +D+ + G+    +LK
Sbjct: 259 ITLDMSISQFTVWCIWSAPLIMSNDLRIIGDSFKDVLK 296


>Z78239-3|CAI79143.1|  309|Caenorhabditis elegans Hypothetical
          protein C30G7.5 protein.
          Length = 309

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -3

Query: 72 MLYVQVAKRP*LRENKHVRLV 10
          ++ +  AK P LR+NKH+RLV
Sbjct: 36 LIIIFFAKIPCLRKNKHLRLV 56


>Z81517-8|CAM84818.1|  357|Caenorhabditis elegans Hypothetical
           protein F28B1.9 protein.
          Length = 357

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 95  FSF*CHFKCYTCKSPKGLSSGRT 27
           FS  C    Y+C  P+ LS GRT
Sbjct: 145 FSLACVADSYSCDCPRILSDGRT 167


>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical protein
            T04F3.1 protein.
          Length = 3517

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 181  AAFSMVEIFSPVTATSSSTRIRAE*TQANSAFDAI 77
            A   M EIFSPV++T+   R  +   +  S +D I
Sbjct: 2794 AGIPMDEIFSPVSSTADGNRRFSNFYEDRSGWDTI 2828


>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical protein
            T04F3.1 protein.
          Length = 3517

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 181  AAFSMVEIFSPVTATSSSTRIRAE*TQANSAFDAI 77
            A   M EIFSPV++T+   R  +   +  S +D I
Sbjct: 2794 AGIPMDEIFSPVSSTADGNRRFSNFYEDRSGWDTI 2828


>AF101307-3|AAC69212.2|  315|Caenorhabditis elegans Hypothetical
          protein F41H8.2 protein.
          Length = 315

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = -3

Query: 48 RP*LRENKHVRLV 10
          RP LR+NKH+RLV
Sbjct: 42 RPDLRKNKHMRLV 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,958,530
Number of Sequences: 27780
Number of extensions: 57773
Number of successful extensions: 128
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 12,740,198
effective HSP length: 45
effective length of database: 11,490,098
effective search space used: 229801960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)