Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_H09
(272 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 27 0.63
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|... 25 1.5
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb... 24 3.4
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi... 24 3.4
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom... 23 5.9
SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr ... 23 5.9
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 23 7.8
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 23 7.8
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 23 7.8
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 23 7.8
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 23 7.8
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 23 7.8
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 23 7.8
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 23 7.8
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa... 23 7.8
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 23 7.8
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 23 7.8
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 23 7.8
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 23 7.8
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 23 7.8
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 23 7.8
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 26.6 bits (56), Expect = 0.63
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 70 LPLCSCDHEITPNLLIKNRGFVFRGFSIPCVPKSFLVRKY 189
+PLC D+ +LL + G RG+ I + K F + +
Sbjct: 165 VPLCETDYFRRLDLLCASCGMALRGYYITALNKKFHIEHF 204
>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
3|||Manual
Length = 834
Score = 25.4 bits (53), Expect = 1.5
Identities = 13/43 (30%), Positives = 18/43 (41%)
Frame = +1
Query: 82 SCDHEITPNLLIKNRGFVFRGFSIPCVPKSFLVRKYPPKEDHI 210
+C H + NR + GFS SF VR+ +E I
Sbjct: 245 TCQHRNNVGTDLANRVYSIEGFSSKSASDSFFVRRLNGEEQKI 287
>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 394
Score = 24.2 bits (50), Expect = 3.4
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -1
Query: 248 TRLDRRDSTFCSIMWSSLGGYLRTRK 171
TRL DS CS + S GG R K
Sbjct: 106 TRLKENDSRLCSPLASPTGGLKRPAK 131
>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 970
Score = 24.2 bits (50), Expect = 3.4
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -1
Query: 257 LWRTRLDRRDSTFCSI 210
LW+ R D RD CSI
Sbjct: 492 LWKNRKDFRDKLICSI 507
>SPBC18H10.09 |||zinc finger protein, zf-CHY
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 23.4 bits (48), Expect = 5.9
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = +3
Query: 135 FSWFFHSVCAEVLPCPQ 185
F WF S C V PC +
Sbjct: 336 FRWFRFSCCDRVYPCDE 352
>SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 23.4 bits (48), Expect = 5.9
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 145 FSIPCVPKSFLVRKYPPKEDH 207
+SIPC K ++ R + EDH
Sbjct: 28 YSIPCFIKGYVRRFWMRSEDH 48
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 23.0 bits (47), Expect = 7.8
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 1 GFRHEPCRTARERDRSNFKKGTHLPLCSCDHEIT 102
GFR R ++ + K TH L SCD EIT
Sbjct: 173 GFRASKLRQSKASALIH-KSATHPSLDSCDVEIT 205
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 7.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 38 VIDRISKKAHTYPCAPVIT 94
V+DR SK A PC IT
Sbjct: 1007 VVDRFSKMAILVPCTKSIT 1025
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2685
Score = 23.0 bits (47), Expect = 7.8
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +1
Query: 136 FRGFSIPCVPKSFLVRKYPPKEDHIIE 216
F G + + FL KY P +HI E
Sbjct: 486 FPGMLVANLSSMFLDIKYSPSSEHIFE 512
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 7.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 38 VIDRISKKAHTYPCAPVIT 94
V+DR SK A PC IT
Sbjct: 1007 VVDRFSKMAILVPCTKSIT 1025
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 7.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 38 VIDRISKKAHTYPCAPVIT 94
V+DR SK A PC IT
Sbjct: 1007 VVDRFSKMAILVPCTKSIT 1025
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 7.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 38 VIDRISKKAHTYPCAPVIT 94
V+DR SK A PC IT
Sbjct: 1007 VVDRFSKMAILVPCTKSIT 1025
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 7.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 38 VIDRISKKAHTYPCAPVIT 94
V+DR SK A PC IT
Sbjct: 1007 VVDRFSKMAILVPCTKSIT 1025
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 7.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 38 VIDRISKKAHTYPCAPVIT 94
V+DR SK A PC IT
Sbjct: 1007 VVDRFSKMAILVPCTKSIT 1025
>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 23.0 bits (47), Expect = 7.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 48 EFQKRHTPTPVLL*SRNNSKS 110
E ++R P+P+L NNSKS
Sbjct: 956 EVEERDPPSPLLQMLENNSKS 976
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 7.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 38 VIDRISKKAHTYPCAPVIT 94
V+DR SK A PC IT
Sbjct: 1007 VVDRFSKMAILVPCTKSIT 1025
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 7.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 38 VIDRISKKAHTYPCAPVIT 94
V+DR SK A PC IT
Sbjct: 1007 VVDRFSKMAILVPCTKSIT 1025
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 7.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 38 VIDRISKKAHTYPCAPVIT 94
V+DR SK A PC IT
Sbjct: 1007 VVDRFSKMAILVPCTKSIT 1025
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 23.0 bits (47), Expect = 7.8
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 192 TQRGPHNRTKCRISPIQSRSPKTFWL 269
TQ G CRI+ + SP+ F+L
Sbjct: 1440 TQLGARQSNICRITILMLSSPRDFFL 1465
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 7.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 38 VIDRISKKAHTYPCAPVIT 94
V+DR SK A PC IT
Sbjct: 1007 VVDRFSKMAILVPCTKSIT 1025
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 7.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 38 VIDRISKKAHTYPCAPVIT 94
V+DR SK A PC IT
Sbjct: 1007 VVDRFSKMAILVPCTKSIT 1025
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,322,883
Number of Sequences: 5004
Number of extensions: 27300
Number of successful extensions: 83
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 59659786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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