Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_H09
(272 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0982 + 23116343-23117089,23117227-23117313,23117424-231175... 31 0.13
06_03_1450 + 30246702-30247346,30248603-30248689,30248789-302489... 30 0.22
01_07_0090 - 41003888-41004716,41005142-41005559,41007010-41007193 29 0.67
02_01_0403 - 2938242-2941334 28 0.89
06_01_0185 - 1437693-1437834,1437969-1438078,1438214-1438264,143... 27 1.5
01_06_1060 + 34162161-34162554,34162613-34162675,34163262-341635... 27 1.5
11_04_0307 + 16185405-16185713,16185847-16185942,16186626-161867... 27 2.0
11_01_0189 - 1493618-1493637,1493728-1493795,1494070-1494207,149... 26 3.6
07_01_1100 + 10097044-10097949,10098074-10098274,10098796-100989... 26 3.6
03_05_0095 - 20745639-20745785,20745880-20746065,20746286-207463... 26 3.6
01_06_1308 - 36159406-36159536,36159642-36160616,36161117-361612... 26 3.6
01_06_0823 + 32234588-32234936,32236354-32237093,32237260-322373... 26 3.6
07_03_1611 - 28136398-28136572,28137995-28138567,28138762-28139123 26 4.7
01_01_0667 + 5099026-5099188,5099262-5099661,5099748-5100648 26 4.7
09_06_0328 + 22365308-22365415,22365743-22366018,22366166-223664... 25 6.3
07_01_1133 - 10550799-10551137,10552195-10552254,10555693-105574... 25 6.3
06_03_0097 - 16607936-16608712,16610114-16610320,16611220-166113... 25 8.3
06_01_0441 + 3130906-3131424,3131847-3132269 25 8.3
02_05_0294 + 27609656-27611305 25 8.3
>07_03_0982 +
23116343-23117089,23117227-23117313,23117424-23117555,
23118135-23118269,23118644-23118709,23118797-23118907,
23119237-23119329,23119555-23119659,23119752-23119829
Length = 517
Score = 31.1 bits (67), Expect = 0.13
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 226 RHFVRLCGPLWVDTCGQGRTSAHTE 152
RH R CG ++ D C QGRT+ E
Sbjct: 389 RHHCRNCGEIFCDKCSQGRTALTAE 413
>06_03_1450 +
30246702-30247346,30248603-30248689,30248789-30248920,
30249016-30249162,30250375-30250440,30250519-30250629,
30251551-30251584,30251667-30251743,30251829-30251906
Length = 458
Score = 30.3 bits (65), Expect = 0.22
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 226 RHFVRLCGPLWVDTCGQGRTSAHTE 152
RH R CG ++ D C QGRT T+
Sbjct: 359 RHHCRNCGDIFCDKCTQGRTPLTTD 383
>01_07_0090 - 41003888-41004716,41005142-41005559,41007010-41007193
Length = 476
Score = 28.7 bits (61), Expect = 0.67
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -2
Query: 244 DWIGEIRHFVRLCGPL-W-VDTCGQGRTSAHTEWKNHEK 134
D G +HF R G W D CG+ R + H++WK H K
Sbjct: 147 DLTGIKKHFCRKHGEKKWKCDRCGK-RYAVHSDWKAHSK 184
>02_01_0403 - 2938242-2941334
Length = 1030
Score = 28.3 bits (60), Expect = 0.89
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 214 RLCGPLWVDTCGQGRTSAHTEWKNHEK 134
+LCGP+ V CG +TS + K H K
Sbjct: 640 KLCGPMLVHHCGSDKTS-YVSKKRHNK 665
>06_01_0185 -
1437693-1437834,1437969-1438078,1438214-1438264,
1438877-1439122,1439244-1439315,1439614-1439648,
1439755-1439845,1440546-1440610,1440733-1440813,
1441020-1441137,1441535-1441627,1441865-1441997,
1442471-1442503,1443264-1443343,1443444-1443549,
1443621-1443795,1443884-1443980,1444819-1445251,
1445329-1445459,1446052-1446341,1446429-1447002
Length = 1051
Score = 27.5 bits (58), Expect = 1.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 269 QPESLWRTRLDRRDSTFCSIMW 204
+P SLW+ LD STF S +W
Sbjct: 560 RPSSLWKPYLDMLPSTFGSSIW 581
>01_06_1060 +
34162161-34162554,34162613-34162675,34163262-34163531,
34163944-34164623
Length = 468
Score = 27.5 bits (58), Expect = 1.5
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +2
Query: 2 GFGTSRAELRENVIDRISKKAHTYPCAPVITK*LQIS*LKIGGSFFVVFPFRVCRS 169
G T AEL ++V+D + K+A C + L++ L S ++ F+VC S
Sbjct: 104 GHYTEGAELIDSVLDVVRKEAENCDCLQGCRRLLEVHPLTCCESRNMMHGFQVCHS 159
>11_04_0307 +
16185405-16185713,16185847-16185942,16186626-16186730,
16186938-16187090,16188395-16188478,16188566-16188694,
16188986-16189165,16189555-16189677,16189678-16189794,
16189889-16190053
Length = 486
Score = 27.1 bits (57), Expect = 2.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 212 IMWSSLGGYLRTRKDFGTHGMEKPR 138
++W L GYL T + F H +EK R
Sbjct: 132 LVWKLLLGYLPTERAFWPHELEKKR 156
>11_01_0189 -
1493618-1493637,1493728-1493795,1494070-1494207,
1494647-1494698,1494803-1494902,1495606-1495681,
1495757-1495844,1496248-1496342,1496506-1496605,
1496765-1496879,1497077-1497241,1497362-1497547
Length = 400
Score = 26.2 bits (55), Expect = 3.6
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Frame = -1
Query: 227 STFCSIMWSSLGGYLRTRKDFGT-HGMEKPRKTNPRFLIRRFGVIS*SQEHRGRCVPFLK 51
S+ + WS G YL T K GT H E T+ + V + + GR V L
Sbjct: 231 SSISLVQWSPSGDYLLTAKLDGTFHLWETNTWTSEPWSSSNGYVSGANWDPEGRIV-LLS 289
Query: 50 FDRSRSLAVLHGSCR 6
F S +L +H S +
Sbjct: 290 FSNSTTLGSIHFSSK 304
>07_01_1100 +
10097044-10097949,10098074-10098274,10098796-10098991,
10099697-10099881
Length = 495
Score = 26.2 bits (55), Expect = 3.6
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 226 RHFVRLCGPLWVDTCGQGR 170
RH R CG ++ TC +GR
Sbjct: 205 RHHCRFCGGIFCRTCSKGR 223
>03_05_0095 -
20745639-20745785,20745880-20746065,20746286-20746348,
20747255-20747331,20748692-20749121
Length = 300
Score = 26.2 bits (55), Expect = 3.6
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +3
Query: 180 PQVSTQRGPHNRTKCRISPIQSRSP 254
PQ+ P + +CR+S + SR P
Sbjct: 63 PQIKRPSSPSGQGRCRLSTVMSRVP 87
>01_06_1308 -
36159406-36159536,36159642-36160616,36161117-36161245,
36161403-36161647,36161730-36161881,36161982-36162083
Length = 577
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 144 FFHSVCAEVLPCPQVSTQRGPHN 212
FF +V LPCP T +GP+N
Sbjct: 370 FFFTVGLGTLPCPANMTCQGPNN 392
>01_06_0823 +
32234588-32234936,32236354-32237093,32237260-32237343,
32237909-32239263,32240399-32240460,32240544-32241144,
32241229-32241310,32241778-32241840
Length = 1111
Score = 26.2 bits (55), Expect = 3.6
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +3
Query: 168 VLPCPQVSTQRGP 206
+LPCP VS RGP
Sbjct: 874 ILPCPPVSAHRGP 886
>07_03_1611 - 28136398-28136572,28137995-28138567,28138762-28139123
Length = 369
Score = 25.8 bits (54), Expect = 4.7
Identities = 9/30 (30%), Positives = 15/30 (50%)
Frame = -2
Query: 229 IRHFVRLCGPLWVDTCGQGRTSAHTEWKNH 140
+ H ++ C L D C + T EW++H
Sbjct: 287 VSHNIKFCSRLGGDECTRRLTELGLEWQHH 316
>01_01_0667 + 5099026-5099188,5099262-5099661,5099748-5100648
Length = 487
Score = 25.8 bits (54), Expect = 4.7
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -2
Query: 244 DWIGEIRHFVRLCGPL-W-VDTCGQGRTSAHTEWKNHEK 134
D G +HF R G W D C + R + H++WK H K
Sbjct: 134 DLTGIKKHFSRKHGEKKWKCDKCSK-RYAVHSDWKAHSK 171
>09_06_0328 +
22365308-22365415,22365743-22366018,22366166-22366417,
22366542-22366939,22367028-22368021,22368199-22368409,
22368515-22368749,22368874-22368996,22369190-22369310,
22369416-22369625
Length = 975
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 221 FCSIMWSSLGGYLRTRKDFGTHGMEKPRKTNP 126
F + WS G ++ T THG +KPR + P
Sbjct: 218 FRRLAWSPCGHFITT-----THGFQKPRHSAP 244
>07_01_1133 -
10550799-10551137,10552195-10552254,10555693-10557401,
10557534-10557616,10577533-10578074
Length = 910
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +1
Query: 49 NFKKGTHLPLCSCDHEITPNLLIKNRGFV 135
N +G HLP C NL I N+GFV
Sbjct: 310 NMSEGRHLPWELCQELEKFNLGIVNKGFV 338
>06_03_0097 - 16607936-16608712,16610114-16610320,16611220-16611336,
16611409-16611690,16611811-16612294,16612791-16612929,
16613138-16613243,16613396-16613562,16613632-16613707,
16614173-16614321,16614813-16614874,16615232-16615335,
16616856-16616950,16617046-16617136,16617785-16617922
Length = 997
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 160 HTEWKNHEKRTPDF*SGDLELFRDHRST 77
H E ++H R PD S D E H+S+
Sbjct: 951 HREKRHHRTRNPDTDSSDHEYEERHKSS 978
>06_01_0441 + 3130906-3131424,3131847-3132269
Length = 313
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 181 GQGRTSAHTEWKNHEKRTPDF*SGDLELFRDH 86
GQGR S H W H T +GD+++ H
Sbjct: 33 GQGRASVHAAWTVH---THHLNAGDVDILMLH 61
>02_05_0294 + 27609656-27611305
Length = 549
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = -2
Query: 259 VFGERDWIGEIRHFVRLCGPLWVDTCG 179
V GE DW E + +L G + CG
Sbjct: 507 VIGETDWTAEAKRAQQLTGAADIKDCG 533
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,939,377
Number of Sequences: 37544
Number of extensions: 185569
Number of successful extensions: 459
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 256259052
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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