Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_H09
         (272 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72496-1|CAA96577.1| 3570|Homo sapiens mucin MUC5B protein.            28   4.6  
AL022327-5|CAO03521.1|  223|Homo sapiens megalencephalic leukoen...    28   6.1  
U70667-1|AAB93495.1|  349|Homo sapiens Fas-ligand associated fac...    27   8.1  
AF049528-1|AAC27506.1|  452|Homo sapiens huntingtin-interacting ...    27   8.1  

>Z72496-1|CAA96577.1| 3570|Homo sapiens mucin MUC5B protein.
          Length = 3570

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
 Frame = -2

Query: 202 PLWVDTCGQGRTSAH-----TEWKNHEKRTPDF*SGDLELFRDHRSTGVGVCLF*NSID 41
           PL   T  QG T        TEW + +  T    SGD+E F + R+ G  +C    SI+
Sbjct: 447 PLTNTTTSQGTTRCQPKCEWTEWFDVDFPTSGVASGDMETFENIRAAGGKMCWAPKSIE 505


>AL022327-5|CAO03521.1|  223|Homo sapiens megalencephalic
           leukoencephalopathy with subcortical cysts 1 protein.
          Length = 223

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -3

Query: 141 TKNEPPIFNQEIWSYFVITGAQG*VCAFFEIRSITFSRSSARLVP 7
           +K  PP F+ + W + V+ G     C    I S T SR +A ++P
Sbjct: 40  SKRLPPCFSHKTWVFSVLMG-----CIPSAIVSFTVSRRNANVIP 79


>U70667-1|AAB93495.1|  349|Homo sapiens Fas-ligand associated factor
           1 protein.
          Length = 349

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 227 STFCSIMWSSLGGYLRTRKDFGTHGM 150
           S+ CS  W S  G+LR R   G  GM
Sbjct: 29  SSLCSGSWVSADGFLRRRPSMGHPGM 54


>AF049528-1|AAC27506.1|  452|Homo sapiens huntingtin-interacting
           protein HYPA/FBP11 protein.
          Length = 452

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 227 STFCSIMWSSLGGYLRTRKDFGTHGM 150
           S+ CS  W S  G+LR R   G  GM
Sbjct: 40  SSLCSGSWVSADGFLRRRPSMGHPGM 65


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,290,632
Number of Sequences: 237096
Number of extensions: 1018561
Number of successful extensions: 1827
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1825
length of database: 76,859,062
effective HSP length: 68
effective length of database: 60,736,534
effective search space used: 1336203748
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)