Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_H08
(193 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 65 1e-12
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 33 0.007
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 31 0.021
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 27 0.26
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 27 0.34
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 23 4.2
SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces ... 23 5.6
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos... 23 7.4
SPBC215.02 |bob1|gim5, gim5|prefoldin subunit 5 |Schizosaccharom... 23 7.4
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 22 9.8
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 22 9.8
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 64.9 bits (151), Expect = 1e-12
Identities = 31/44 (70%), Positives = 37/44 (84%)
Frame = +3
Query: 60 ISLLNPKAELARASQALAVNISAAKGIQDVMKANLGPKGTMKML 191
+SLLNPKAE + +QAL VNISAA G+QDV+K+NLGP GT KML
Sbjct: 2 LSLLNPKAESIQRAQALQVNISAAIGLQDVLKSNLGPTGTTKML 45
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 32.7 bits (71), Expect = 0.007
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 60 ISLLNPKAELARASQALAVNISAAKGIQDVMKANLGPKGTMKML 191
+ ++N +A NI AAK + DV++ LGP+ +KML
Sbjct: 5 VFVMNTNGNRQVGHKAQMSNIQAAKAVADVIRTCLGPRAMLKML 48
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 31.1 bits (67), Expect = 0.021
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 117 NISAAKGIQDVMKANLGPKGTMKML 191
NI AA+ + D ++ +LGPKG KM+
Sbjct: 24 NIMAARSVADAIRTSLGPKGMDKMI 48
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 27.5 bits (58), Expect = 0.26
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 108 LAVNISAAKGIQDVMKANLGPKGTMKML 191
L NI+A +QD ++ LGP G K++
Sbjct: 26 LLSNINACVAVQDTIRTTLGPLGADKLM 53
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 27.1 bits (57), Expect = 0.34
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 117 NISAAKGIQDVMKANLGPKGTMKML 191
N+ A I +V+K++LGP G KML
Sbjct: 26 NVLATTAIANVVKSSLGPVGLDKML 50
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 23.4 bits (48), Expect = 4.2
Identities = 10/37 (27%), Positives = 16/37 (43%)
Frame = -2
Query: 120 YSQLKPVKPSQVQLWDLIN*LQPFRVNVAKRTPSCRY 10
Y + K S LW+L+N F + +A + Y
Sbjct: 2300 YHNVSSFKGSTPSLWNLLNQFSKFLIEIASANSNIVY 2336
>SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 23.0 bits (47), Expect = 5.6
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = -3
Query: 170 WAEVSFHHILNTFG 129
W++ HHIL FG
Sbjct: 260 WSDKDLHHILGKFG 273
>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 22.6 bits (46), Expect = 7.4
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +3
Query: 45 LEMAAISLLNPKAELARASQALAVNI 122
+ ++ + LLNPK LA + Q ++I
Sbjct: 463 VSLSLLQLLNPKTRLAGSLQLFCLSI 488
>SPBC215.02 |bob1|gim5, gim5|prefoldin subunit 5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 154
Score = 22.6 bits (46), Expect = 7.4
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = -1
Query: 130 AAEIFTAKACEALASSALGFNKLIAAISSQCR 35
A E + K CE LASS N I A S Q R
Sbjct: 104 ATEYYKRK-CEYLASSIENLNNAIDAKSVQIR 134
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 22.2 bits (45), Expect = 9.8
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 60 ISLLNPKAELARASQALAVNISAAKGIQDVMKAN 161
+ L P+ L+ + ALA++ S KG++ KA+
Sbjct: 272 LRLKRPEEALSDSDNALAIDSSYLKGLKVRAKAH 305
>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 22.2 bits (45), Expect = 9.8
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = -2
Query: 99 KPSQVQLWDLIN*LQP 52
K Q LWD N LQP
Sbjct: 634 KSFQFSLWDFFNELQP 649
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 727,712
Number of Sequences: 5004
Number of extensions: 9905
Number of successful extensions: 22
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 43
effective length of database: 2,147,306
effective search space used: 42946120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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