Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_H08
(193 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0337 - 2658647-2658722,2658797-2658915,2658995-2659102,265... 63 3e-11
06_03_0353 + 19810945-19810975,19811308-19811369,19811741-198118... 33 0.032
06_03_0477 - 21250811-21250981,21251261-21251374,21251447-212516... 33 0.042
02_02_0253 - 8325437-8325628,8325705-8325779,8325933-8326037,832... 33 0.042
02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949 32 0.074
02_02_0208 + 7856215-7856622 27 1.6
11_06_0763 - 27101764-27104017,27104523-27105055,27106403-27106993 26 3.7
10_08_0620 - 19321612-19323237 26 3.7
09_03_0067 - 12035991-12036389,12036928-12037071,12037917-120379... 25 8.5
01_05_0654 + 23965868-23967718 25 8.5
>05_01_0337 -
2658647-2658722,2658797-2658915,2658995-2659102,
2659187-2659255,2659561-2659655,2659740-2659944,
2660125-2660211,2660291-2660405,2660696-2660802,
2661054-2661146,2661243-2661290,2661345-2661544,
2661993-2662128,2662228-2662291,2662779-2662912
Length = 551
Score = 62.9 bits (146), Expect = 3e-11
Identities = 28/45 (62%), Positives = 37/45 (82%)
Frame = +3
Query: 57 AISLLNPKAELARASQALAVNISAAKGIQDVMKANLGPKGTMKML 191
++ +LNP AE+ S AL +NI+AAKG+QDV+K NLGPKGT+KML
Sbjct: 2 SLRVLNPNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKML 46
>06_03_0353 +
19810945-19810975,19811308-19811369,19811741-19811813,
19813292-19813359,19813496-19813565,19813908-19813976,
19814065-19814136,19814247-19814320,19814420-19814697,
19814804-19815188,19815268-19815393,19815583-19815687,
19815986-19815994,19817040-19817114,19817202-19817390
Length = 561
Score = 33.1 bits (72), Expect = 0.032
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +3
Query: 54 AAISLLNPKAELARASQALAVNISAAKGIQDVMKANLGPKGTMKML 191
A + +L + ++ NI AAK + D+++ LGP+ +KML
Sbjct: 5 APVLVLKDSLKRESGTKVHHANIQAAKAVADIIRTTLGPRSMLKML 50
>06_03_0477 -
21250811-21250981,21251261-21251374,21251447-21251613,
21252051-21252153,21252315-21252367,21252438-21252570,
21252835-21253183,21253685-21254003,21254519-21254717
Length = 535
Score = 32.7 bits (71), Expect = 0.042
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 78 KAELARASQALAVNISAAKGIQDVMKANLGPKGTMKML 191
K R A NI+A K + +++ +LGPKG KML
Sbjct: 20 KKSRLRGLDAQKANIAAGKAVARILRTSLGPKGMDKML 57
>02_02_0253 -
8325437-8325628,8325705-8325779,8325933-8326037,
8326249-8326374,8326451-8326835,8326931-8327208,
8327294-8327367,8327476-8327547,8327637-8327705,
8340132-8340201,8340806-8340873,8341571-8341643,
8341807-8341868,8342168-8342198
Length = 559
Score = 32.7 bits (71), Expect = 0.042
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +3
Query: 54 AAISLLNPKAELARASQALAVNISAAKGIQDVMKANLGPKGTMKML 191
A + +L + ++ NI AAK + D+++ LGP+ +KML
Sbjct: 5 APVLVLKDSLKRESGTKVHHANIQAAKAVADIIRTTLGPQSMLKML 50
>02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949
Length = 550
Score = 31.9 bits (69), Expect = 0.074
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 93 RASQALAVNISAAKGIQDVMKANLGPKGTMKML 191
R +NI+AA+ + D ++ +LGP+G KM+
Sbjct: 23 RRDDVRGLNIAAARAVADAVRTSLGPRGMDKMI 55
>02_02_0208 + 7856215-7856622
Length = 135
Score = 27.5 bits (58), Expect = 1.6
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = -1
Query: 181 IVPFGPRLAFITS*IPLAAEIFTAKACEALASSALGFNKLIAAISS 44
+ P P T IPL FTA A +AL + +G + L A SS
Sbjct: 74 LAPGEPAPPTTTPTIPLGINNFTASAAQALQAGRIGTSVLANASSS 119
>11_06_0763 - 27101764-27104017,27104523-27105055,27106403-27106993
Length = 1125
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +3
Query: 75 PKAELARASQALAVNI 122
PKAELA+ S+ L++NI
Sbjct: 869 PKAELAKCSEVLSINI 884
>10_08_0620 - 19321612-19323237
Length = 541
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +3
Query: 93 RASQALAVNISAAKGIQDVMKANLGPKGTMKML 191
R +NI+A + + + +LGP+G KM+
Sbjct: 23 RRDDVRGLNIAAGRAVAAAARTSLGPRGMDKMI 55
>09_03_0067 -
12035991-12036389,12036928-12037071,12037917-12037946,
12039881-12040159
Length = 283
Score = 25.0 bits (52), Expect = 8.5
Identities = 7/19 (36%), Positives = 15/19 (78%)
Frame = -2
Query: 147 HLEYLWQLKYSQLKPVKPS 91
HL++ WQ++++Q P+ P+
Sbjct: 247 HLQHRWQMQHAQTAPMIPT 265
>01_05_0654 + 23965868-23967718
Length = 616
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 139 IPLAAEIFTAKACEALASSALGFNKLIAAISSQC 38
+PL A K EA AS++ + +A++S QC
Sbjct: 8 LPLPATRHPPKPHEASASASASLHAALASLSQQC 41
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,569,133
Number of Sequences: 37544
Number of extensions: 61119
Number of successful extensions: 121
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 14,793,348
effective HSP length: 43
effective length of database: 13,178,956
effective search space used: 263579120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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