Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_H07
         (267 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0528 + 21782567-21782651,21783355-21783563,21784095-217842...    28   1.2  
02_04_0185 - 20748206-20748405,20749067-20749232,20749373-207494...    27   1.6  
12_02_1069 + 25801309-25801433,25802429-25802620,25803130-258031...    27   2.7  
04_04_0368 + 24741755-24741970,24742415-24742811,24742892-247431...    26   3.6  
01_06_0810 - 32141657-32142105,32142986-32143034,32144961-32145110     26   3.6  
01_02_0052 - 10662985-10662993,10663932-10664453                       26   3.6  
12_01_0421 - 3321590-3323692                                           26   4.8  

>06_03_0528 +
           21782567-21782651,21783355-21783563,21784095-21784232,
           21784520-21784734,21784813-21784967,21785010-21785071,
           21785832-21785834
          Length = 288

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 97  SSAGRRPGNVVQINRHYFAFLNRKRAHANTF 5
           + A + P NVV + +H ++ + R  A  NTF
Sbjct: 63  AEASKLPSNVVTVGKHSYSKVGRSMAILNTF 93


>02_04_0185 -
           20748206-20748405,20749067-20749232,20749373-20749471,
           20749487-20749561,20749663-20749743,20750121-20750274,
           20750330-20750425,20750518-20750727,20750746-20750957
          Length = 430

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 16  RVPVSYLKKQNNDD*FVLRSRVGALQSCSTHS*GAKPQSQ-LKVGRSPP 159
           R+P S LKK N  D  +  S  GAL++ ST     KP S   ++ + PP
Sbjct: 324 RLPASALKKDNAPDVAMKESSDGALETQST-----KPSSDGQQINKEPP 367


>12_02_1069 +
           25801309-25801433,25802429-25802620,25803130-25803159,
           25803426-25803500,25803599-25804373,25804549-25804614,
           25804746-25804811,25804898-25805140,25805407-25805502
          Length = 555

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 243 RSRGRHRLA*GPCAEDINFRNSGFRCSPWWRSTNFKLR 130
           + RG   +  G  +ED+ F ++   CSP  ++T  K R
Sbjct: 351 KQRGGAAMESGSPSEDVEFESAAATCSPAQKTTTAKRR 388


>04_04_0368 +
           24741755-24741970,24742415-24742811,24742892-24743187,
           24743860-24744096
          Length = 381

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -1

Query: 195 INFRNSGFRCSPWWRSTNFKLRLRFSALAVSRTALQGADPGT 70
           + F +S FRC   W+  +F LR + +  +     L   D G+
Sbjct: 51  VPFNSSAFRCLTVWKQEDFVLRYKNTGESQWSFILSAPDKGS 92


>01_06_0810 - 32141657-32142105,32142986-32143034,32144961-32145110
          Length = 215

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +3

Query: 198 PRHTVPTLVDDGLSIWESRAI 260
           P   VP L D  L +WESRAI
Sbjct: 51  PFGQVPALQDGDLFLWESRAI 71


>01_02_0052 - 10662985-10662993,10663932-10664453
          Length = 176

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -1

Query: 258 WRATPRSRGRHRLA*GPCAEDINFRNSGFRCSPWWRSTNFKLRLRFSA 115
           +R  PR+ G   L  GP  ++  F    F  SP  RS   + R R +A
Sbjct: 89  FRGGPRTAGSSSLVFGPADDESAFMVGPFESSPTPRSGGGRKRSRATA 136


>12_01_0421 - 3321590-3323692
          Length = 700

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +2

Query: 155 HHGEHLKPEFLKLMSSAHGPYASR*RPLDLGVARHHH 265
           HH  H    F +  +    P  +  R L LG A HHH
Sbjct: 14  HHAPHKSSSFSQPSARDDKPRDAIDRNLSLGSAGHHH 50


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,269,460
Number of Sequences: 37544
Number of extensions: 116074
Number of successful extensions: 250
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 14,793,348
effective HSP length: 67
effective length of database: 12,277,900
effective search space used: 257835900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)