Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_H07
         (267 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   2.6  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    20   4.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    19   8.0  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     19   8.0  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 2.6
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -3

Query: 241 IERPSSTSVGTVCRGHQLQKF 179
           +++  S+S  T C GH ++ F
Sbjct: 280 VKQHRSSSASTTCSGHTVRCF 300


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 20.2 bits (40), Expect = 4.6
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = -3

Query: 58  NRHYFAFL 35
           NRHY+AF+
Sbjct: 472 NRHYYAFV 479


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 19.4 bits (38), Expect = 8.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 234 GRHRLA*GPCAEDINFRNS 178
           G+HR+  GP   DI FR S
Sbjct: 407 GQHRILKGPANPDI-FRVS 424


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 19.4 bits (38), Expect = 8.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 234 GRHRLA*GPCAEDINFRNS 178
           G+HR+  GP   DI FR S
Sbjct: 113 GQHRILKGPANPDI-FRVS 130


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,522
Number of Sequences: 438
Number of extensions: 1031
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5012760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)