Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_H06
(328 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 172 1e-44
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 172 1e-44
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 31 0.058
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 25 2.2
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 25 2.9
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po... 25 2.9
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 25 3.8
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c... 25 3.8
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 3.8
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 24 6.7
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 24 6.7
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces... 23 8.8
SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces ... 23 8.8
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc... 23 8.8
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 172 bits (418), Expect = 1e-44
Identities = 75/99 (75%), Positives = 85/99 (85%)
Frame = +1
Query: 31 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYELF 210
M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYE
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 211 STEALEAGRICCNKYLVKNCGKDQFHIRMRLQPFHVIRI 327
++EALEA RIC NKYLVK GKD FH+R+R PFHV+RI
Sbjct: 61 TSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRI 99
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 172 bits (418), Expect = 1e-44
Identities = 75/99 (75%), Positives = 85/99 (85%)
Frame = +1
Query: 31 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYELF 210
M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYE
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 211 STEALEAGRICCNKYLVKNCGKDQFHIRMRLQPFHVIRI 327
++EALEA RIC NKYLVK GKD FH+R+R PFHV+RI
Sbjct: 61 TSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRI 99
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 30.7 bits (66), Expect = 0.058
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 55 YRYCKNKPYPKSRFCRGVPDP-KIRIFDLGKKRATVDDFPLCVHLVSDEYELFSTEALEA 231
Y+ N ++FC V + KI + +KRA +D LC+ +S + EL + +LE+
Sbjct: 34 YQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLES 93
Query: 232 G 234
G
Sbjct: 94 G 94
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 25.4 bits (53), Expect = 2.2
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +1
Query: 199 YELFSTEALEAGRICCNKYLVKNCG 273
Y L T A A + CC Y +CG
Sbjct: 326 YPLIQTSAAAAAKQCCGGYSGTSCG 350
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 25.0 bits (52), Expect = 2.9
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 112 DPKIRIFDLGKKRATVDDFPLC 177
DPK+R+F KRAT + C
Sbjct: 320 DPKLRVFPFTTKRATHSELLRC 341
>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 374
Score = 25.0 bits (52), Expect = 2.9
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -2
Query: 171 WEVIHCRSLFAQVENTDLWVRHTPT 97
+ ++H +LFA EN D ++ PT
Sbjct: 343 YAILHWNTLFANEENWDSYIPQDPT 367
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 24.6 bits (51), Expect = 3.8
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +1
Query: 88 SRFCRGVPDPKIRIFDLGKKRATVDDFP-LCVHLVSDE 198
S FC PDPK K A DD P + H+ S++
Sbjct: 84 SFFCTTTPDPKTESPSFVKYNAHCDDHPEISGHVSSND 121
>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 297
Score = 24.6 bits (51), Expect = 3.8
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +2
Query: 137 WAKRERQWMTSH 172
W +RERQW+ H
Sbjct: 91 WLRRERQWLQRH 102
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 24.6 bits (51), Expect = 3.8
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Frame = +1
Query: 133 DLGKKRATVDDFPLCVHLVSDEYE---LFSTEALEAGRICCN--KYLVKNCGK 276
++ KKRA DD + +VS EYE L S++ ++ N KY+ KN K
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENLLLISSQTNKSLEDKTNQLKYIEKNVQK 1085
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 23.8 bits (49), Expect = 6.7
Identities = 11/43 (25%), Positives = 18/43 (41%)
Frame = -2
Query: 129 NTDLWVRHTPTKPRFRIRFILTISITSRWSAPHCVLHKALVPK 1
N LW R+ K +R R + S RW+ + + P+
Sbjct: 952 NQRLWRRNRNEKLIYRTRPLAEYSTNGRWNQQLMTFNNTIAPR 994
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 23.8 bits (49), Expect = 6.7
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +3
Query: 246 QQVPRKELR*RSVPHPDETTALPCHP 323
+++P+KE + RS P P+ + P P
Sbjct: 1047 EELPQKESQERSSPSPENQDSTPLAP 1072
>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 720
Score = 23.4 bits (48), Expect = 8.8
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Frame = -2
Query: 297 HPDVELIFTAVLYEVLVATDTACFQRLSTKKLVLIRH*VHA*WEVI-HC--RSLFAQVEN 127
HP + +Y +L DTAC K L +E+ HC SL N
Sbjct: 342 HPILPTCTQETVYSLLTGNDTACVYPFPNKPYRL----PDVDFEIFSHCSFESLTTVTTN 397
Query: 126 TDLW 115
T++W
Sbjct: 398 TNIW 401
>SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 307
Score = 23.4 bits (48), Expect = 8.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +1
Query: 127 IFDLGKKRATVDDFPLCVH 183
IFD AT+DD CVH
Sbjct: 143 IFDFLTLSATIDDTIFCVH 161
>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 553
Score = 23.4 bits (48), Expect = 8.8
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 158 WMTSHYACT*CLMSTSFLVLRRWKQAVSVA 247
W++SH C++ST FL W+ VA
Sbjct: 428 WLSSHVLFGVCMLSTIFL-QTSWQAQAMVA 456
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,451,767
Number of Sequences: 5004
Number of extensions: 27912
Number of successful extensions: 91
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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