Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_H06
(328 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 166 3e-42
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 154 1e-38
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 144 1e-35
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 32 0.12
07_03_0770 - 21375099-21375122,21375321-21375448,21375541-213756... 27 3.5
11_06_0643 - 25773250-25773843 27 4.6
06_03_0243 + 18629793-18630047,18630362-18630442,18631911-186323... 26 6.1
05_06_0191 - 26265460-26267016,26267858-26268356,26268789-262688... 26 6.1
04_04_0295 - 24212526-24212684,24213066-24213218,24213497-242136... 26 6.1
10_08_0972 + 21958658-21958825,21959006-21959197,21959645-219598... 26 8.0
07_03_1497 - 26990647-26991531,26991609-26991967,26992302-26992371 26 8.0
06_03_0175 + 17553447-17553667,17555313-17555467,17555625-175557... 26 8.0
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 166 bits (404), Expect = 3e-42
Identities = 72/99 (72%), Positives = 83/99 (83%)
Frame = +1
Query: 31 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYELF 210
MGRRPARCYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+FP CVHLVS E E
Sbjct: 1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENV 60
Query: 211 STEALEAGRICCNKYLVKNCGKDQFHIRMRLQPFHVIRI 327
S+EALEA RI CNKY+ KN GKD FH+R+R+ PFHV+RI
Sbjct: 61 SSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRI 99
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 154 bits (374), Expect = 1e-38
Identities = 66/95 (69%), Positives = 78/95 (82%)
Frame = +1
Query: 43 PARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYELFSTEA 222
P RCYR KNKPYPKSR+CRGVPDPKIRIFD+G+K+ + DDFPLCVHLVS E E S+EA
Sbjct: 312 PVRCYRQIKNKPYPKSRYCRGVPDPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSEA 371
Query: 223 LEAGRICCNKYLVKNCGKDQFHIRMRLQPFHVIRI 327
LEA RI CNKY+ K+ GKD FH+R+ P+HV+RI
Sbjct: 372 LEAARIACNKYMAKHAGKDAFHLRVCAHPYHVLRI 406
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 144 bits (349), Expect = 1e-35
Identities = 62/92 (67%), Positives = 75/92 (81%)
Frame = +1
Query: 52 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYELFSTEALEA 231
CYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+F CVHLVS E E ++EALEA
Sbjct: 4 CYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEA 63
Query: 232 GRICCNKYLVKNCGKDQFHIRMRLQPFHVIRI 327
RI CNKY+ K+ GKD FH+R+R+ PFHV+RI
Sbjct: 64 ARIACNKYMTKSAGKDAFHLRVRVHPFHVLRI 95
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 31.9 bits (69), Expect = 0.12
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 154 TVDDFPLC-VHLVSDEYELFSTEALEAGRICCNKYLVKNCG 273
T D P C +HL SD Y +S E ++AG+ C L K G
Sbjct: 587 TTDWNPRCDIHLKSDGYTNYSLETVQAGKQQCKAALQKELG 627
>07_03_0770 -
21375099-21375122,21375321-21375448,21375541-21375672,
21377016-21377874
Length = 380
Score = 27.1 bits (57), Expect = 3.5
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -1
Query: 295 SGCGTDLYRSSLRGTCCNR 239
+GCGT++ R ++ G CNR
Sbjct: 97 AGCGTNVSRDAVAGPTCNR 115
>11_06_0643 - 25773250-25773843
Length = 197
Score = 26.6 bits (56), Expect = 4.6
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -1
Query: 295 SGCGTDLYRSSLRGTCCNRYG 233
S TD++ +S+ CC RYG
Sbjct: 144 SSSSTDVFLNSVSARCCRRYG 164
>06_03_0243 +
18629793-18630047,18630362-18630442,18631911-18632305,
18632471-18632926,18633156-18633247,18633528-18633683,
18635657-18636057
Length = 611
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -1
Query: 259 RGTCCNRYGLLPAPQY*KARTHQTLSARIVGSHPLS 152
R CC GL P P R+ +L A S P+S
Sbjct: 179 RSRCCRHRGLSPPPSRSSPRSPSSLPAAPAASLPVS 214
>05_06_0191 -
26265460-26267016,26267858-26268356,26268789-26268859,
26269079-26269515,26269626-26269681,26269682-26270479,
26270918-26270973
Length = 1157
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 61 YCKNKPYPKSRFCRGVPDPKIRIFDLGKKRA 153
+C +PYPK VPD ++ GK +A
Sbjct: 395 FCMYEPYPKGSLEDDVPDTTVQDMLCGKAKA 425
>04_04_0295 -
24212526-24212684,24213066-24213218,24213497-24213601,
24213694-24213913,24214033-24214199,24214323-24214497,
24214627-24214799,24214914-24214983,24215401-24215900
Length = 573
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 286 GTDLYRSSLRGTCCNRYGLLPAPQ 215
G D+ ++L+ C RYGL AP+
Sbjct: 59 GEDVDLNALKSAACRRYGLARAPK 82
>10_08_0972 +
21958658-21958825,21959006-21959197,21959645-21959845,
21959920-21960009,21960424-21960591,21961100-21961354,
21961506-21961789,21961878-21962040,21962156-21962502,
21962726-21962759
Length = 633
Score = 25.8 bits (54), Expect = 8.0
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +1
Query: 46 ARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVH 183
A +RYC + + +S+F R P + DL K V + C H
Sbjct: 407 AEIFRYCLDGTHERSKFLRAAA-PSVNEDDLIKLANQVSLYSGCTH 451
>07_03_1497 - 26990647-26991531,26991609-26991967,26992302-26992371
Length = 437
Score = 25.8 bits (54), Expect = 8.0
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +1
Query: 61 YCKNKPYPKSRFCRGVPDPKIRIFDL--GKKRATVDDFPLCVHLVSD 195
+CK+ P KS + G+P P FD+ GK R ++ L +V+D
Sbjct: 141 HCKDHPRAKSLY--GIPFPYFDTFDVIYGKDRTGREEEELSDEVVAD 185
>06_03_0175 +
17553447-17553667,17555313-17555467,17555625-17555713,
17556253-17556376,17556920-17556989,17557345-17557441,
17559365-17559427,17559504-17559581,17559675-17559737
Length = 319
Score = 25.8 bits (54), Expect = 8.0
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1
Query: 73 YSYNIDNISLVGAPLCSPQS 14
Y Y D I L+G PLC P S
Sbjct: 168 YLYPYDEIVLLGIPLCVPWS 187
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,948,412
Number of Sequences: 37544
Number of extensions: 197684
Number of successful extensions: 468
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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