Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_H03
         (180 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       25   1.3  
SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyce...    25   1.8  
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    23   5.3  
SPCC330.10 |pcm1||mRNA capping methyltransferase|Schizosaccharom...    22   9.3  
SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces pombe...    22   9.3  

>SPAC1952.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 158

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 55  KRRELLPRVQRARSGRRQHVAFP 123
           +RRE LP  +R  +  +QH  FP
Sbjct: 67  RRREDLPTPERPEASAQQHAFFP 89


>SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 445

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 133 STLLGMLRVDVGRSERAVRAVTVHVVYQSVN 41
           +TLLG+   D   S  AVR++  H +  S N
Sbjct: 225 ATLLGLFVTDAPISVDAVRSILRHAINNSFN 255


>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 481

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = -3

Query: 157 QVYCLLVDSTLLGMLRVDVGRSERAVRAVTVHVVYQSVNILREC 26
           + YCLL  ST   + +  V    R + A+++ V  + +N+L++C
Sbjct: 409 KAYCLL-PSTCEQISQAWVNLEYR-LEAISISVADKEINLLKDC 450


>SPCC330.10 |pcm1||mRNA capping
           methyltransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 389

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 28  IHAEYSPTDKRRELLPRVQRAR 93
           +H E  PT+ RR   P  Q  R
Sbjct: 37  VHEEQPPTENRRYARPTAQMNR 58


>SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 460

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 74  GNSSRRLSVGEYSA*MSVDP 15
           GN ++ +   EYSA +S DP
Sbjct: 378 GNRNKNIGNNEYSAQISSDP 397


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 668,470
Number of Sequences: 5004
Number of extensions: 9467
Number of successful extensions: 35
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 40
effective length of database: 2,162,318
effective search space used: 41084042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)