Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_H03
         (180 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81545-8|CAB04444.1|  327|Caenorhabditis elegans Hypothetical pr...    27   1.3  
Z75711-1|CAB00032.1|  196|Caenorhabditis elegans Hypothetical pr...    25   7.1  
AF067618-1|AAC19199.2| 1174|Caenorhabditis elegans Hypothetical ...    25   7.1  
AF067608-1|AAC17654.2|  544|Caenorhabditis elegans Hypothetical ...    25   7.1  

>Z81545-8|CAB04444.1|  327|Caenorhabditis elegans Hypothetical
           protein F49H6.11 protein.
          Length = 327

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -3

Query: 178 YLHCLISQVYCLLVDSTLLGMLRVDVGRSERAVRAVTVHVVY 53
           YL C ++++Y L         L++  GR +  V  +  HV +
Sbjct: 283 YLRCNLNELYNLFTSFNCCKFLKIVFGRVDATVHPILPHVAF 324


>Z75711-1|CAB00032.1|  196|Caenorhabditis elegans Hypothetical
           protein K02B12.2 protein.
          Length = 196

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
 Frame = +1

Query: 13  HGSTDIHAEYSPTDKRR--ELLPRVQ 84
           H + DIH++ SP  KR+  E+ P+++
Sbjct: 83  HNAEDIHSKPSPAKKRKSEEVKPKIE 108


>AF067618-1|AAC19199.2| 1174|Caenorhabditis elegans Hypothetical
           protein F56H1.3 protein.
          Length = 1174

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +2

Query: 14  TDLPTFTQNIHRLINDVNCYRAYSALAPADVN 109
           TDL T T N HRL    N     +     D+N
Sbjct: 98  TDLQTVTDNFHRLSRIANAIYLQAITIRKDIN 129


>AF067608-1|AAC17654.2|  544|Caenorhabditis elegans Hypothetical
           protein B0511.6 protein.
          Length = 544

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 19  STDIHAEYSPTDKRRELLPRVQRARSG 99
           + D   +Y PTD+ RE + RV R   G
Sbjct: 382 AVDWIVQYDPTDEPREYIHRVGRTARG 408


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,765,241
Number of Sequences: 27780
Number of extensions: 53813
Number of successful extensions: 160
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 12,740,198
effective HSP length: 40
effective length of database: 11,628,998
effective search space used: 220950962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)