Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_H01
         (113 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    23   4.0  
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    23   4.0  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    23   4.0  

>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -1

Query: 110 DNTDTAMEQNFGFVCYHRKELLKDYIIQAP 21
           D+T   + ++ G VCY        Y+ Q P
Sbjct: 666 DSTTQNLTESLGSVCYPSMPFFNQYVPQNP 695


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 92  MEQNFGFVCYHRKELLKDYIIQAPRAELMQ 3
           M+Q    + YHR  + +++II  P  E +Q
Sbjct: 610 MQQVVQLMKYHRAVMRENFIILGPEVEQVQ 639


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 44  LRALFYGNKRSRSSVPLQYRYY 109
           ++ L Y      SS+PLQYR Y
Sbjct: 22  VKPLNYKTAIGNSSIPLQYRNY 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 435,371
Number of Sequences: 5004
Number of extensions: 4232
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 2,362,478
effective HSP length: 19
effective length of database: 2,267,402
effective search space used: 40813236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)