Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_H01
         (113 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1206 + 34941293-34941562,34942052-34942153,34942249-349425...    25   8.6  
02_05_0717 + 31190626-31191234,31191954-31192394,31192699-311928...    25   8.6  

>02_05_1206 +
           34941293-34941562,34942052-34942153,34942249-34942521,
           34942863-34942913
          Length = 231

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -1

Query: 101 DTAMEQNFGFVCYHRKELLKDYIIQAPRAEL 9
           +T   + +GFVCY  KE + + +      EL
Sbjct: 187 ETGRSRGYGFVCYSTKEEMDEALSSLNGTEL 217


>02_05_0717 + 31190626-31191234,31191954-31192394,31192699-31192802,
            31193000-31194384,31194508-31194548,31195065-31195133,
            31195335-31195435,31195747-31195825,31195939-31196037,
            31196119-31196187,31197609-31197658,31197749-31197925,
            31198045-31198152,31198224-31198290
          Length = 1132

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 104  TDTAMEQNFGFVCYHRKELLKDYIIQAPRAELMQ 3
            TD  +  +F  +    K LLK+   QAPR  + Q
Sbjct: 1075 TDPKLRPSFADIMASLKPLLKNMTAQAPRQRVQQ 1108


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,559,292
Number of Sequences: 37544
Number of extensions: 22462
Number of successful extensions: 61
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 14,793,348
effective HSP length: 18
effective length of database: 14,117,556
effective search space used: 268233564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)