Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_G23
         (170 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0179 + 15483854-15483968,15484196-15484302,15485211-154853...    26   5.0  
04_01_0033 + 391565-391974,393484-393520,394959-395483                 25   8.7  

>10_08_0179 +
           15483854-15483968,15484196-15484302,15485211-15485304,
           15485537-15485637,15486143-15486199,15486614-15486761,
           15486982-15487049
          Length = 229

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +3

Query: 21  ETICQFCNYFNLNTYNWRKFCD--FEPTLRERTNHVV 125
           E IC F    +L+  NW+ F +  F+P   +  +H++
Sbjct: 55  EAICWFVEMGSLSRMNWKYFMEDIFQPAHEDDIHHLL 91


>04_01_0033 + 391565-391974,393484-393520,394959-395483
          Length = 323

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 93  PTLRERTNHVVTPHLSV 143
           P LRE  N V+TPH++V
Sbjct: 274 PELREMENVVLTPHVAV 290


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,219,594
Number of Sequences: 37544
Number of extensions: 55328
Number of successful extensions: 145
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 14,793,348
effective HSP length: 36
effective length of database: 13,441,764
effective search space used: 268835280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)