Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_G23
         (170 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY204177-1|AAO39181.1|  385|Caenorhabditis elegans nuclear recep...    26   3.1  
AL022272-2|CAA18351.1|  385|Caenorhabditis elegans Hypothetical ...    26   3.1  
AF098999-4|AAC68729.1|  659|Caenorhabditis elegans Hypothetical ...    25   7.2  
AF039053-3|AAC25880.2|  349|Caenorhabditis elegans Hypothetical ...    25   7.2  
Z79757-8|CAB02128.2|  355|Caenorhabditis elegans Hypothetical pr...    25   9.5  

>AY204177-1|AAO39181.1|  385|Caenorhabditis elegans nuclear receptor
           NHR-68 protein.
          Length = 385

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 123 QHDWFSLLELAQSRKTFSNYKY 58
           + DWF L E A++ K F N  Y
Sbjct: 193 ERDWFVLTEYAKTFKVFKNMPY 214


>AL022272-2|CAA18351.1|  385|Caenorhabditis elegans Hypothetical
           protein H12C20.3 protein.
          Length = 385

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 123 QHDWFSLLELAQSRKTFSNYKY 58
           + DWF L E A++ K F N  Y
Sbjct: 193 ERDWFVLTEYAKTFKVFKNMPY 214


>AF098999-4|AAC68729.1|  659|Caenorhabditis elegans Hypothetical
           protein W04C9.6 protein.
          Length = 659

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = +3

Query: 24  TICQFCNYFNLNTYNWRKFC--DFEPTLRERTNH 119
           T+C      N+NTYN+ K C  D   T   + N+
Sbjct: 17  TLCLTSILSNMNTYNFTKICMQDDNSTSTSKVNY 50


>AF039053-3|AAC25880.2|  349|Caenorhabditis elegans Hypothetical
           protein C45H4.13 protein.
          Length = 349

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 36  FCNYFNLNTYNWRKFCDFEPTLRER 110
           +C Y  ++T N+ KFC FEP   +R
Sbjct: 13  YCFYSAMST-NFYKFCHFEPKKFDR 36


>Z79757-8|CAB02128.2|  355|Caenorhabditis elegans Hypothetical
           protein F55B12.7 protein.
          Length = 355

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = -1

Query: 149 YNHRQVWGNNMIGSLS*SWLKVAKLSPIISIQV 51
           YN    W N+++G ++ +W  +  L+PI+ + +
Sbjct: 106 YNEVNYWLNSLVGGVAGTWAYL--LTPILQVSM 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,913,061
Number of Sequences: 27780
Number of extensions: 57031
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 12,740,198
effective HSP length: 37
effective length of database: 11,712,338
effective search space used: 222534422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)