Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_G22
         (254 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    27   0.30 
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    26   0.69 
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    25   1.6  
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce...    25   2.1  
SPCC1442.09 |trp3||anthranilate synthase component I|Schizosacch...    24   2.8  
SPBC21H7.07c |his5||imidazoleglycerol phosphate dehydratase|Schi...    23   6.4  
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy...    23   6.4  
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce...    23   8.5  
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc...    23   8.5  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    23   8.5  
SPCC13B11.03c |||hydroxyacylglutathione hydrolase |Schizosacchar...    23   8.5  
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom...    23   8.5  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    23   8.5  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    23   8.5  

>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 27.5 bits (58), Expect = 0.30
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 148 GRYGIEDIPVDMCTHMIYSFIGVTE 222
           G+  +E+I + +  HM YS +GV +
Sbjct: 283 GKLSVEEISITLSDHMYYSLLGVID 307


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
            subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 26.2 bits (55), Expect = 0.69
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -3

Query: 225  LLSDTDERVDHM-STHINRNILDAVTSYARPVHRPIT 118
            L++D DER   +    I +  L  VTSY   V+ P+T
Sbjct: 1102 LINDRDERSARVVKGRIEKTYLKDVTSYIEEVYGPVT 1138


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 25.0 bits (52), Expect = 1.6
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -3

Query: 144 ARPVHRPITEVANYTSSAIRLNRGREYRQDSQRRKYLSHFERRGVP 7
           A P+  P+   A +  S   LNR  ++++  Q ++YLS   +  +P
Sbjct: 390 ASPLSTPLK--AQFDPSKPALNRSIDHQKTPQHKRYLSTEFKENIP 433


>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 357

 Score = 24.6 bits (51), Expect = 2.1
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -3

Query: 237 DLVSLLSDTDERVDHMSTHINRNILDAVTSYARPV 133
           D+ + LS+   +VD M   ++RN    + S+A+P+
Sbjct: 245 DMRNDLSNLTRKVDRMDMRLSRNNNMIMRSFAQPI 279


>SPCC1442.09 |trp3||anthranilate synthase component
           I|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 489

 Score = 24.2 bits (50), Expect = 2.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 130 VYRPGVGRYGIEDIPVDMC 186
           +Y   VGR+G ED  +D C
Sbjct: 411 IYAGAVGRWGYEDDNMDTC 429


>SPBC21H7.07c |his5||imidazoleglycerol phosphate
           dehydratase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 124 WAVYRPGVGRYGIEDIPVDMCTHMIYSF 207
           +AV   G+ R  + ++  +M  H++YSF
Sbjct: 137 YAVIDLGLKREKVGELSCEMIPHLLYSF 164


>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 327

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -3

Query: 123 ITEVANYTSSAIRLNRGREYRQD 55
           +TEV + T + + +N+ + YR+D
Sbjct: 1   MTEVESSTENNVIVNKNKRYRRD 23


>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -3

Query: 219 SDTDERVDHMSTHINRNILDAVTSYARPV 133
           + T +++     HI +NI+D + S  +P+
Sbjct: 324 NSTPQKIIQPQRHIQKNIVDDLFSVKKPL 352


>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
           Mis17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 441

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 13/54 (24%), Positives = 23/54 (42%)
 Frame = -3

Query: 249 VNDEDLVSLLSDTDERVDHMSTHINRNILDAVTSYARPVHRPITEVANYTSSAI 88
           V+  +    +SD D+     S     NIL+   S        ++ + N +SSA+
Sbjct: 61  VSQSEAYHKISDLDDSTSIFSISDQENILERRISEEVVRENSVSSIENVSSSAV 114


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
 Frame = -3

Query: 177  NRNILDAVTSYARPVHRPITE-------VANYTSSAIRLNRGREYR 61
            N N L  V + A   +  +T+       +A+YTS  + LN  + YR
Sbjct: 1929 NFNYLQIVNTLAGRTYNDLTQYPVFPWVIADYTSKELDLNNPKTYR 1974


>SPCC13B11.03c |||hydroxyacylglutathione hydrolase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 256

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = +1

Query: 154 YGIEDIPVDMCTHMIYSFIGVTEKTNEVLVIDP 252
           + I  IP+ + T   Y+++ + E+T +  ++DP
Sbjct: 3   FQILPIPMWVGTQDNYAYLLLCEETRQAAIVDP 35


>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 597

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -3

Query: 249 VNDEDLVSLLSDTDERVDHMSTHINRN 169
           ++DE+LV+L S +DE   +   +++ N
Sbjct: 66  LSDEELVALESSSDEEDGNAEENLSEN 92


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 102 TSSAIRLNRGREYRQDSQRRKYL 34
           + S  RLNR R  ++D  RR+ L
Sbjct: 110 SGSPKRLNRSRSSKEDMYRRRSL 132


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 66  YRQDSQRRKYLSHFERRG 13
           + Q  +RRK    FERRG
Sbjct: 940 FNQKKERRKTFLSFERRG 957


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 994,896
Number of Sequences: 5004
Number of extensions: 17668
Number of successful extensions: 67
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 49493712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)