Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_G22
         (254 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0018 - 13826587-13827695,13827907-13827966,13828332-138283...    29   0.68 
05_03_0074 + 8095355-8096575,8096664-8096901,8096990-8097667,809...    28   0.90 
12_01_0400 + 3169597-3170504,3170510-3171269                           27   2.1  
09_06_0185 - 21422946-21423671,21423746-21423924,21424004-214242...    26   3.6  
06_01_0949 - 7317123-7317425,7317548-7317883,7317969-7318364           26   3.6  
04_01_0603 - 7931162-7931446,7932217-7932718,7932824-7934925           26   3.6  
02_02_0183 + 7576901-7576908,7577666-7578176                           26   3.6  
12_01_0704 + 6061461-6061873,6062149-6062891,6062994-6063451           26   4.8  
11_01_0584 - 4640982-4641439,4641541-4642273                           26   4.8  
10_03_0047 - 7358656-7359113,7359216-7359948                           26   4.8  
09_04_0293 - 16442989-16443446,16443548-16444280                       26   4.8  
08_02_1426 + 27009720-27010787,27011846-27012517,27012999-270137...    26   4.8  
07_03_0731 - 21031002-21031459,21031562-21032304,21032580-21032992     26   4.8  
03_05_0129 - 21102892-21103349,21103452-21104184                       26   4.8  
01_06_0808 + 32134765-32136570                                         26   4.8  
02_03_0174 + 15991418-15991888,15992007-15992126,15992763-159928...    25   6.4  
08_02_0497 - 17811413-17811529,17811644-17811724,17812693-178128...    25   8.4  
04_03_0185 + 12419956-12420001,12420133-12421373                       25   8.4  
02_03_0220 + 16545571-16545573,16545717-16545818,16545980-165460...    25   8.4  
02_01_0443 + 3204142-3204674,3205446-3206178                           25   8.4  
02_01_0352 - 2542088-2542985,2543523-2543563,2543798-2543950           25   8.4  
01_06_0753 - 31711300-31713066                                         25   8.4  

>09_04_0018 -
           13826587-13827695,13827907-13827966,13828332-13828368,
           13830281-13830341,13831295-13831443
          Length = 471

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -3

Query: 171 NILDAVTSYARPVHRPITEVANYTSS--AIRLNRGREYRQ 58
           N  D+VTSYA  + RP+T +  Y  S   + LN G  + +
Sbjct: 275 NTTDSVTSYALHLDRPVTFLKKYLHSFDVLVLNTGHHWNR 314


>05_03_0074 +
           8095355-8096575,8096664-8096901,8096990-8097667,
           8097787-8097974
          Length = 774

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = -3

Query: 219 SDTD-ERVDHMSTHINRNILDAVTSYARPVHRPITEVANYTSSAIRLNRGREYRQD 55
           SD D E ++ +   +NR I D V   A      +    NY  + +R   G+EY  D
Sbjct: 691 SDFDVEEMNQLPFQLNRYISDVVLPVATAGVERVFSSMNYIKNKLRSKMGQEYLND 746


>12_01_0400 + 3169597-3170504,3170510-3171269
          Length = 555

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 201 VDHMSTHINRNILDAVTSYARPVHRPITEVANYTSSAIRL 82
           VDH++ +  R +   ++  A P   P    AN++S A R+
Sbjct: 218 VDHLAYYFARGLKLRISGAATPASSPPPPAANWSSPAYRM 257


>09_06_0185 -
           21422946-21423671,21423746-21423924,21424004-21424241,
           21424319-21424759
          Length = 527

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/46 (28%), Positives = 17/46 (36%)
 Frame = +3

Query: 66  IHDRGSIGWXXXXXXXXXXXGGVPAWRRTLRHRGYSC*YVYSYDLL 203
           + D  + GW            G  AWR T+ H       VY +D L
Sbjct: 109 VGDDAADGWERWNGNGEAFGDGSGAWRLTVHHDDTDTTQVYEFDFL 154


>06_01_0949 - 7317123-7317425,7317548-7317883,7317969-7318364
          Length = 344

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +3

Query: 126 GGVPAWRRTLRHRGYS 173
           GGVPAW  T R   YS
Sbjct: 136 GGVPAWEMTKRDNSYS 151


>04_01_0603 - 7931162-7931446,7932217-7932718,7932824-7934925
          Length = 962

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 65  YSRPRFNRMAELV*FATSVIGRCTGL 142
           YSR  ++  +EL+  A S++ RC GL
Sbjct: 346 YSRKDYDCPSELLELANSIVDRCQGL 371


>02_02_0183 + 7576901-7576908,7577666-7578176
          Length = 172

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/35 (34%), Positives = 13/35 (37%)
 Frame = +3

Query: 60  GGIHDRGSIGWXXXXXXXXXXXGGVPAWRRTLRHR 164
           GG    G +GW           G V  WRR  R R
Sbjct: 104 GGGGGGGGVGWMGMRRAEGGGSGSVARWRRWRRRR 138


>12_01_0704 + 6061461-6061873,6062149-6062891,6062994-6063451
          Length = 537

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 42  CDAGCPGGIHDR 77
           CDAG PG +HD+
Sbjct: 355 CDAGWPGSVHDQ 366


>11_01_0584 - 4640982-4641439,4641541-4642273
          Length = 396

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 42  CDAGCPGGIHDR 77
           CDAG PG +HD+
Sbjct: 214 CDAGWPGSVHDQ 225


>10_03_0047 - 7358656-7359113,7359216-7359948
          Length = 396

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 42  CDAGCPGGIHDR 77
           CDAG PG +HD+
Sbjct: 214 CDAGWPGSVHDQ 225


>09_04_0293 - 16442989-16443446,16443548-16444280
          Length = 396

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 42  CDAGCPGGIHDR 77
           CDAG PG +HD+
Sbjct: 214 CDAGWPGSVHDQ 225


>08_02_1426 + 27009720-27010787,27011846-27012517,27012999-27013793,
            27014914-27014943,27018095-27019987
          Length = 1485

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 35   RYLRRWLSWRYSRPRFNRMAE 97
            R LRRW++  YSR + N  AE
Sbjct: 969  RLLRRWIAEGYSRAKRNNNAE 989


>07_03_0731 - 21031002-21031459,21031562-21032304,21032580-21032992
          Length = 537

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 42  CDAGCPGGIHDR 77
           CDAG PG +HD+
Sbjct: 355 CDAGWPGSVHDQ 366


>03_05_0129 - 21102892-21103349,21103452-21104184
          Length = 396

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 42  CDAGCPGGIHDR 77
           CDAG PG +HD+
Sbjct: 214 CDAGWPGSVHDQ 225


>01_06_0808 + 32134765-32136570
          Length = 601

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = -3

Query: 234 LVSLLSDTDERVDHMSTHI 178
           L SLL DTD R  H ST I
Sbjct: 383 LDSLLKDTDRRCQHFSTDI 401


>02_03_0174 +
           15991418-15991888,15992007-15992126,15992763-15992801,
           15994032-15994275,15994388-15994674
          Length = 386

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +3

Query: 36  DTCDAGCPGGI 68
           D+CDAGC GG+
Sbjct: 217 DSCDAGCNGGL 227


>08_02_0497 -
          17811413-17811529,17811644-17811724,17812693-17812815,
          17812945-17813193
          Length = 189

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 6  RAHRDVQNATDTCDAGCPGGIHDRG 80
          RA R  +N+T T    C GG   RG
Sbjct: 21 RAFRPPRNSTPTASLSCDGGSRCRG 45


>04_03_0185 + 12419956-12420001,12420133-12421373
          Length = 428

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 12  HRDVQNATDTCDAGCPGGIHDRGS 83
           HRDV++A    DA C   + D G+
Sbjct: 215 HRDVKSANILLDANCTAKVSDFGA 238


>02_03_0220 +
           16545571-16545573,16545717-16545818,16545980-16546008,
           16549421-16553036
          Length = 1249

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 213 TDERVDHMSTHINRNILDAVTSYARPVHRP 124
           TDE +D M   +   ILD   SY +P+  P
Sbjct: 421 TDEELDTMLPQVGYKILDPPASY-QPIRTP 449


>02_01_0443 + 3204142-3204674,3205446-3206178
          Length = 421

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = -3

Query: 228 SLLSDTDERVDHMSTHINRNILDAVTSYARPVHR---PITEVANYTSSAIRLNRGREYRQ 58
           S++  + E +   + H N ++LD + ++++ VHR   P+   A    +A  +     YR 
Sbjct: 159 SVIGHSLEGLTLWTLHPNTSVLDCMETFSKGVHRALVPLESAAENVVAAELVEAAPGYRM 218

Query: 57  DSQ 49
            +Q
Sbjct: 219 VTQ 221


>02_01_0352 - 2542088-2542985,2543523-2543563,2543798-2543950
          Length = 363

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = +2

Query: 2   HEGTPRRS--KCDRYLRRWLSWRYSRPRFNRMA 94
           H G P  S  +C RY+RR  S R  +P F   A
Sbjct: 22  HYGAPSPSSERCSRYVRRDRSHRSFKPPFEDTA 54


>01_06_0753 - 31711300-31713066
          Length = 588

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -3

Query: 246 NDEDLVSLLSDTDERVDHMSTHINRNILDAVTSYARPVHRPITEV 112
           ND  L+SLL   DE+ D  S+H  +N++        P  + I E+
Sbjct: 317 NDSSLLSLLRTMDEQ-DDSSSH--QNVISGAKPQPGPNQQSIIEI 358


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,985,466
Number of Sequences: 37544
Number of extensions: 131479
Number of successful extensions: 361
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 14,793,348
effective HSP length: 63
effective length of database: 12,428,076
effective search space used: 260989596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)