Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_G22
         (254 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   1.4  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   2.4  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    20   5.5  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    20   5.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   5.5  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 1.4
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
 Frame = -3

Query: 246 NDEDLVSLLSDTDERVDHMSTHINRNILDAVTSYARPVHRPITEVANYTSSAIRLNRGRE 67
           N E   SLLSDT++   H   H   ++   V + +  VH   +  AN ++S+      + 
Sbjct: 713 NSEMFSSLLSDTEQ---HFRQH-RDSLSPRVENRSAIVHSEASANANSSTSSEESREEKA 768

Query: 66  YRQ-DSQRRKYLSHFER 19
               ++++R+   H E+
Sbjct: 769 TTSLEAEKREKSEHCEK 785


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 2.4
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -3

Query: 123 ITEVANYTSSAIRLNRGREYRQDSQRRKYLSHFERRG 13
           I+ VA Y +     N G  YR   Q +  + H  RRG
Sbjct: 413 ISRVAAYNTYG--RNAGLRYRGPKQNKPKVLHAIRRG 447


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
          determiner protein.
          Length = 185

 Score = 19.8 bits (39), Expect = 5.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 81 NRGREYRQDSQRRKYLSHFER 19
          +R REYR+D +  K  +  E+
Sbjct: 7  DRNREYRKDRRYEKLHNEKEK 27


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
          determiner protein.
          Length = 185

 Score = 19.8 bits (39), Expect = 5.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 81 NRGREYRQDSQRRKYLSHFER 19
          +R REYR+D +  K  +  E+
Sbjct: 7  DRNREYRKDRRYEKLHNEKEK 27


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 19.8 bits (39), Expect = 5.5
 Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = -3

Query: 153  TSY-ARPVHRPITEVANYTSSAIRLNRGREYRQDSQRRKYLSHFERRGVPS 4
            TS+ ++ + RP T+  N+T   + +    +      RR+ +     RG+ S
Sbjct: 1137 TSFDSKVMTRPDTDSENWTPKMMAVEPTDKQANSKTRRQEMMREAGRGIES 1187


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,585
Number of Sequences: 438
Number of extensions: 1441
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4511484
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)