Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_G21
         (303 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    27   0.61 
SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr ...    25   2.4  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   3.2  
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    25   3.2  
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi...    24   5.6  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    24   5.6  
SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr ...    24   5.6  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    24   5.6  
SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces pomb...    23   7.5  
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch...    23   7.5  
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ...    23   7.5  
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po...    23   9.9  
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom...    23   9.9  

>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 27.1 bits (57), Expect = 0.61
 Identities = 15/57 (26%), Positives = 29/57 (50%)
 Frame = +2

Query: 29  LRTLANARSSSPLAEIDQEAVVRFIASLTRVNNELADSQAGMATVVCQYIVRHPTAS 199
           + TL+ + SS+P+         +  +S++ V++E +DS +   TV+    V  P  S
Sbjct: 156 ISTLSMSPSSTPVFSPSASVSSKVASSVSYVSSEPSDSSSSTNTVILTTSVNSPAVS 212


>SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 451

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +3

Query: 126 TNWLTVKRVWRLLCAST*CVTRPHQKWDSRAACWRYCH 239
           TN+L +K ++ + C         ++ WD    CW+  H
Sbjct: 321 TNFLAIKDIF-IACIRRSLAYPLYRNWDLALTCWKDTH 357


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 164 VCQYIVRHPTASEVGLACRLLALLSP 241
           +C +I+     S  GLACR L LL+P
Sbjct: 291 LCWWIIPMALGSSAGLACRAL-LLNP 315


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 8/30 (26%), Positives = 14/30 (46%)
 Frame = +2

Query: 98  FIASLTRVNNELADSQAGMATVVCQYIVRH 187
           ++      NN L D ++   T  C Y++ H
Sbjct: 369 YVVHSNHTNNTLTDKESSDPTEKCLYLIEH 398


>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
           Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +2

Query: 41  ANARSSSPLAEIDQEAVVRFIASLTRVNNELADSQA 148
           +N+RS+ P+     EA++R   SL +++     S+A
Sbjct: 593 SNSRSTIPITVRQLEAIIRITESLAKMSLSPIASEA 628


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 282 SMLASSKARCTSRGGDSSASKRHASPTSDA 193
           S LASS    +S    S+ S   A+PTS A
Sbjct: 147 SSLASSSTTSSSLASSSTNSTTSATPTSSA 176


>SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 174 YWHTTVAIPA*LSANSLLTLVREAMNLTTASWSI 73
           +W TT  I A   +NS+    R A    T+ +SI
Sbjct: 91  FWITTTVIQALFFSNSITEYARYATGHGTSGYSI 124


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 26  TLRTLANARSSSPLAEIDQEAVVRFIASLTRVNNEL 133
           T   LAN   S    +   E + R  ASL ++NNEL
Sbjct: 885 TQERLANIEDSFSETKQQNENLQRESASLKQINNEL 920


>SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 455

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -3

Query: 154 HTRLTVSQFVIDSRKRSDESNNCLLVY 74
           H  L +  F I +++ SD+   C L++
Sbjct: 326 HLLLVIQAFTIKNKEVSDDEQLCFLIH 352


>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 333

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -3

Query: 175 VLAHNSRHTRLTVSQFVIDSRK-RSDESNNC 86
           V  HN R  R    + ++DSRK R  E  NC
Sbjct: 139 VCGHNQRFPRYNRIRALLDSRKGRCGEWANC 169


>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 282 SMLASSKARCTSRGGDSSASKRH 214
           S+ +  K +   RGGD+S S+RH
Sbjct: 84  SVESRKKEQSDVRGGDTSYSRRH 106


>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 141 VKRVWRLLCAST*CVTRPHQKWDS 212
           + +VWR + A    VTR + +WD+
Sbjct: 138 ISKVWRSILAEKPRVTRFNIQWDN 161


>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 12/54 (22%), Positives = 25/54 (46%)
 Frame = +2

Query: 65  LAEIDQEAVVRFIASLTRVNNELADSQAGMATVVCQYIVRHPTASEVGLACRLL 226
           L  + +  + + I  + ++  E+   Q  +A ++   +    T  E+GL CR L
Sbjct: 297 LQRLSRTEINKEIIEIEKLELEVVQFQMSIANLINTQVEVTNTIEELGLRCRPL 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,092,744
Number of Sequences: 5004
Number of extensions: 17535
Number of successful extensions: 49
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)