Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_G21
(303 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0332 + 19652207-19652995 31 0.23
03_05_0598 + 26006027-26006746,26007992-26008094,26008847-26012394 30 0.30
02_05_0073 - 25602268-25603182,25603273-25604190 28 1.6
07_03_1383 + 26172329-26172448,26172770-26172961 27 3.7
03_02_0224 + 6557284-6558052,6559057-6559131,6560125-6561395 27 3.7
11_06_0198 - 21158350-21159528 26 4.9
03_02_0057 - 5312812-5312852,5313061-5313201,5314159-5314345 26 4.9
01_01_1152 + 9170628-9171899 26 4.9
12_02_0464 + 19387078-19387857 26 6.5
06_01_0434 - 3089300-3089698 26 6.5
05_03_0662 + 16732965-16733037,16733310-16733413,16734468-167348... 26 6.5
02_02_0335 + 9063749-9064216,9064846-9064890,9065351-9065470,906... 26 6.5
12_02_0730 + 22614601-22614775,22615073-22615380 25 8.6
10_08_0386 + 17448803-17449067,17449704-17449708 25 8.6
06_03_1488 + 30484904-30485134,30485239-30487159,30487255-304876... 25 8.6
05_05_0315 - 24030695-24030787,24030896-24030995,24031120-240312... 25 8.6
04_04_0261 + 24007790-24009098,24009191-24011118 25 8.6
>06_03_0332 + 19652207-19652995
Length = 262
Score = 30.7 bits (66), Expect = 0.23
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 178 SASPDRIRSGTRVPLAGATVTTARRAPSL 264
S SP IRS TR LA A + A R+P++
Sbjct: 198 SRSPSPIRSSTRFDLAAAAIDAAARSPAM 226
>03_05_0598 + 26006027-26006746,26007992-26008094,26008847-26012394
Length = 1456
Score = 30.3 bits (65), Expect = 0.30
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +2
Query: 83 EAVVRFIASLTRVNNELADSQAGMATVVCQYIV--RHPTASEVG 208
E + + +A L + N SQ G TVV + RHP ASEVG
Sbjct: 1130 ENITQEVARLVKANAGHVKSQMGWRTVVLLLSITARHPDASEVG 1173
>02_05_0073 - 25602268-25603182,25603273-25604190
Length = 610
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 175 HSASPDRIRSGTRVPLAGATVTTARRAPSLRA 270
H SP R RSG+R +G A R+P RA
Sbjct: 161 HRGSPQRKRSGSRERSSGGGSRRASRSPGRRA 192
>07_03_1383 + 26172329-26172448,26172770-26172961
Length = 103
Score = 26.6 bits (56), Expect = 3.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 279 MLASSKARCTSRGGDSSASKRHASPTS 199
M A C +RGG ++AS R A P+S
Sbjct: 1 MAAHVDGECPARGGTAAASARAAPPSS 27
>03_02_0224 + 6557284-6558052,6559057-6559131,6560125-6561395
Length = 704
Score = 26.6 bits (56), Expect = 3.7
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = -1
Query: 303 SFIDKSRSMLASSKARCTSRGGDSSASKRHAS 208
+F+ + S+ +S+ +RCT + ++ SKR A+
Sbjct: 629 TFMSTTSSLCSSAPSRCTDKSWGTAKSKRQAA 660
>11_06_0198 - 21158350-21159528
Length = 392
Score = 26.2 bits (55), Expect = 4.9
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +3
Query: 195 HQKWDSRAACWRYCHHR 245
H++W R C R CH R
Sbjct: 360 HREWHERQRCMRDCHER 376
>03_02_0057 - 5312812-5312852,5313061-5313201,5314159-5314345
Length = 122
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 166 VPVHSASPDRIRSGTRVPLAGATVTTARRAPS 261
+P H+ +R+ P A A T RRAPS
Sbjct: 1 MPSHAIPSPLLRARPPAPSAAAAAATGRRAPS 32
>01_01_1152 + 9170628-9171899
Length = 423
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 14 ARGPTLRTLANARSSSPLAEIDQEAVVRFIASLTRVNN 127
ARG T R L S LAE+ + R +A L + N
Sbjct: 79 ARGETQRELLGFLGSPSLAELHRSPTTRLVARLRHLPN 116
>12_02_0464 + 19387078-19387857
Length = 259
Score = 25.8 bits (54), Expect = 6.5
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Frame = +2
Query: 80 QEAVVRFIASLTRVNNELADSQAGMATVVCQYIVRHPTAS----EVGLACRLLALLSPPR 247
+EAV +A + VNN + D Q + Q +V T S E+ A R A+++
Sbjct: 107 EEAVGAALADVVAVNNLINDLQDALDARRVQLVVAQSTKSQIFAEITAAARSPAVITEES 166
Query: 248 DVHLAFELANML 283
A ELA +L
Sbjct: 167 RSWAAAELAALL 178
>06_01_0434 - 3089300-3089698
Length = 132
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1
Query: 285 RSMLASSKARCTSRGGDSSASKRHASPTSDAVG 187
++M+ S +A + GGD +R A S A+G
Sbjct: 88 KTMIDSVRAATPAAGGDGGTRRRGADDNSGAIG 120
>05_03_0662 +
16732965-16733037,16733310-16733413,16734468-16734861,
16736291-16736901,16739238-16739289,16739771-16739826,
16739962-16740190,16740980-16741212,16741480-16741740
Length = 670
Score = 25.8 bits (54), Expect = 6.5
Identities = 14/20 (70%), Positives = 14/20 (70%)
Frame = +2
Query: 5 GISARGPTLRTLANARSSSP 64
GISARG TLR A AR SP
Sbjct: 651 GISARGETLRE-AEARKDSP 669
>02_02_0335 +
9063749-9064216,9064846-9064890,9065351-9065470,
9066025-9067527
Length = 711
Score = 25.8 bits (54), Expect = 6.5
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = -1
Query: 237 DSSASKRHASPTSDAVG*RTMYWHTTVAIPA*LSANSLLTLVREAMNLTTASWSISAKGE 58
D + +R + DA RT Y H+ V + +S + + +A + ++ W + E
Sbjct: 520 DHTGPRRSYTGNMDAPKRRTEYSHSVVGESSHMSDVQIYSQCNKARSSSSRPWHATRTQE 579
Query: 57 LD-RAFANVRSVGPRAEIP 4
+D +A A + EIP
Sbjct: 580 IDSQASARTVPADEQNEIP 598
>12_02_0730 + 22614601-22614775,22615073-22615380
Length = 160
Score = 25.4 bits (53), Expect = 8.6
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 47 ARSSSPLAEIDQEAVVRFIASLTRVNNELA-DSQAGMATVVCQYIVRHPT 193
A + S LA+I+ E + SL+ +L D GM ++ Y+V HPT
Sbjct: 108 AGAGSCLAKINVEYELEDGGSLSPEKEKLILDGYFGMLKMIEDYLVAHPT 157
>10_08_0386 + 17448803-17449067,17449704-17449708
Length = 89
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 20 GPTLRTLANARSSSPLAEIDQEA 88
GPT A AR+ +P+AEID +A
Sbjct: 38 GPTSPPPAVARNHAPMAEIDGDA 60
>06_03_1488 +
30484904-30485134,30485239-30487159,30487255-30487691,
30487777-30487983
Length = 931
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 142 SSGYGDCCVPVHSASPDRIRSGTRVPLA 225
+ G DC P+ S RIRS T +PL+
Sbjct: 474 NQGSNDCSPPIIRRSRGRIRSLTDMPLS 501
>05_05_0315 -
24030695-24030787,24030896-24030995,24031120-24031247,
24031350-24031517,24031626-24031741,24031773-24031896,
24032085-24032254,24032255-24032999
Length = 547
Score = 25.4 bits (53), Expect = 8.6
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = +1
Query: 154 GDCCVPVHSASPD--RIRSGTRVPL--AGATVTTARRAPS 261
G+CC P S+ PD SG+ P AGA + A +PS
Sbjct: 2 GNCCPPGSSSEPDPPPASSGSSRPAGSAGAAASPATISPS 41
>04_04_0261 + 24007790-24009098,24009191-24011118
Length = 1078
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -2
Query: 92 QLPPGLFRLKENSTVRLLMCVVLALVPKS 6
+LP + R++ ST+RL C + +P S
Sbjct: 390 ELPASIGRMRSLSTLRLSECAISGEIPSS 418
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,830,869
Number of Sequences: 37544
Number of extensions: 136100
Number of successful extensions: 426
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 351703996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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