Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_G20
         (202 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    26   0.79 
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    25   1.4  
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb...    25   1.4  
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    25   1.4  
SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual    24   3.2  
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3...    22   9.7  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    22   9.7  
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual      22   9.7  
SPBC3B9.21 |dcp1||mRNA decapping complex subunit Dcp1|Schizosacc...    22   9.7  

>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.8 bits (54), Expect = 0.79
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +3

Query: 3   SARGKAVMDSRMVDIPLSVTMYRWVVNEDRWLNLSDV 113
           S  GKA  D  MV +   V  Y+W   E+ W  +  V
Sbjct: 326 SKPGKADGDVVMVRVNNDVEAYQWSQKENEWKKIGQV 362


>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 96  LNLSDVRHVAPELWRSLCRLRRVADRAQMIAAD 194
           L+L D   +APE WR+  RL  +   +Q++ +D
Sbjct: 375 LSLDD--SLAPESWRTFSRLLNLPSPSQLMKSD 405


>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 3   SARGKAVMDSRMVDIPLSVTMYRWVVNED-RWLNLSDVRHV 122
           S   K  ++SR   IPL +    +VVNE+ + L+L   R++
Sbjct: 348 SKNEKKALESRKSSIPLQMNYALYVVNEELQSLSLKSKRNI 388


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -2

Query: 153 ADIENATAPVPRVAHRLNSATCLRSPP 73
           + ++   AP+ +  +  +S+TC R+PP
Sbjct: 138 SSVKETAAPIKQPKNANSSSTCTRTPP 164


>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 533

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +2

Query: 8   TRKGCYGFAYG*YSTIGHYVPLGGERRQVAEF-KRC 112
           +RKGC G   G  + +G   PLG   R +  F K C
Sbjct: 252 SRKGCQGAVSGQETILGVVGPLGRSVRDMNLFMKAC 287


>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 175

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +2

Query: 71  LGGERRQVAEFKRCATRGTGAVAFSMSAA 157
           +G E R++     C T GTG    +   A
Sbjct: 1   MGNEERELPNIIICGTPGTGKTTLAEQVA 29


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -2

Query: 195 NRQRSFVHDQPHDAADIENATAPVP 121
           N+Q   + ++P    D+EN   P P
Sbjct: 519 NKQTDLLQNKPEALLDLENRFLPKP 543


>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 89  VFVHHPTVHSDR*WNINHTRIHNSLSS 9
           VF H  T  + R     H R+HNSLS+
Sbjct: 185 VFFHEYTTETIR----PHVRLHNSLST 207


>SPBC3B9.21 |dcp1||mRNA decapping complex subunit
           Dcp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 127

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 36  MVDIPLSVTMYRWVVNEDRWLNLS 107
           ++DI   V +Y++ V   +WL  S
Sbjct: 26  IIDIASHVAVYQFDVGSQKWLKTS 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 905,099
Number of Sequences: 5004
Number of extensions: 15229
Number of successful extensions: 32
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 46
effective length of database: 2,132,294
effective search space used: 42645880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)