Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_G20
(202 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0136 - 22631260-22631325,22631735-22631821,22631898-226320... 42 5e-05
05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,116... 36 0.005
05_01_0431 + 3412178-3412336,3413012-3413109,3413185-3413312,341... 29 0.68
04_01_0095 - 991086-991487,992745-992903 28 0.90
07_01_0119 - 908600-909592,909685-909885 27 1.6
06_03_0370 - 19978462-19978800,19982435-19982591,19982683-199829... 27 1.6
02_05_0258 + 27222058-27223198,27223297-27223460,27224399-272245... 26 3.6
01_06_1842 - 40278875-40280131 26 3.6
12_02_0017 - 12357029-12357070,12357434-12357503,12357722-123578... 26 4.8
08_01_0085 - 626428-627822 26 4.8
08_01_0083 - 604175-605776 26 4.8
12_02_1107 - 26138512-26138625,26138728-26138763,26139843-261399... 25 6.4
12_01_1072 - 11106298-11106660,11109176-11109463,11109537-11110403 25 8.4
04_04_0711 - 27468045-27468264,27468831-27468935,27469431-274694... 25 8.4
02_01_0619 - 4640149-4640463,4641216-4641458 25 8.4
>05_05_0136 - 22631260-22631325,22631735-22631821,22631898-22632026,
22632122-22632190,22632271-22632351,22632598-22632702,
22632786-22633016,22633098-22634272,22634391-22634457,
22636705-22637778,22638119-22638274,22638827-22638985,
22639062-22639220,22639306-22639422,22639502-22639612,
22639690-22640358
Length = 1484
Score = 42.3 bits (95), Expect = 5e-05
Identities = 21/61 (34%), Positives = 36/61 (59%)
Frame = +3
Query: 15 KAVMDSRMVDIPLSVTMYRWVVNEDRWLNLSDVRHVAPELWRSLCRLRRVADRAQMIAAD 194
KAV D+R++DIP S YR ++ ++ LN+ D+ PEL +L + +A R + + +
Sbjct: 1206 KAVKDNRILDIPFSKAFYRLILGQE--LNIYDIHSFDPELAMTLMEFKALAARRKYLESS 1263
Query: 195 S 197
S
Sbjct: 1264 S 1264
>05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,
1164082-1164240,1164663-1164797,1165116-1165268,
1165358-1165479,1165599-1166541,1166677-1166728,
1166873-1167963,1168058-1168384,1168479-1168559,
1168649-1168717,1168809-1168937,1169038-1169121,
1169210-1169275
Length = 1321
Score = 35.9 bits (79), Expect = 0.005
Identities = 16/57 (28%), Positives = 35/57 (61%)
Frame = +3
Query: 15 KAVMDSRMVDIPLSVTMYRWVVNEDRWLNLSDVRHVAPELWRSLCRLRRVADRAQMI 185
+AV+D R++DIPLS Y+ ++ +D L++ D+ P+L +++ + + R + +
Sbjct: 1047 RAVLDGRVLDIPLSKAFYKIMLEQD--LDIYDIPSFDPKLGKTVMEFQALVKRKKFL 1101
>05_01_0431 +
3412178-3412336,3413012-3413109,3413185-3413312,
3413770-3413881,3414309-3414489,3414714-3414896,
3415133-3415315,3416062-3416131,3416413-3416522,
3416604-3416908,3417079-3417175,3417622-3417765,
3418217-3418303,3418387-3418473,3418566-3418706,
3418805-3418930,3419166-3419264,3419690-3419757,
3420275-3420341,3420713-3420883,3420959-3421048,
3421831-3421911,3423397-3423470,3423784-3423855,
3423925-3424017,3424138-3424204
Length = 1030
Score = 28.7 bits (61), Expect = 0.68
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +3
Query: 3 SARGKAVMDSRMVDIPLSVTMYRWVVNEDRWLNLSDVRHVAPELWRSLCRLR 158
S GKA+ + +VD+P + + ++ +LN D+ + PEL+R L L+
Sbjct: 766 SLLGKAIYEGILVDLPFATFFLSKLKHKYNFLN--DLPSLDPELYRHLLSLK 815
>04_01_0095 - 991086-991487,992745-992903
Length = 186
Score = 28.3 bits (60), Expect = 0.90
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +3
Query: 84 EDRWLNLSDVRHVAPELW-RSLCRLRR 161
ED+WL S +R +APEL+ R R+RR
Sbjct: 85 EDKWLQGSSLRSLAPELYDRVPVRVRR 111
>07_01_0119 - 908600-909592,909685-909885
Length = 397
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +3
Query: 123 APELWRSLCRLRRVADRA 176
AP LWR+ R R ADRA
Sbjct: 267 APRLWRAAARATRAADRA 284
>06_03_0370 -
19978462-19978800,19982435-19982591,19982683-19982917,
19983029-19983239,19985597-19985700,19985871-19985957,
19986225-19986354
Length = 420
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 189 QRSFVHDQPHDAADIENATAPVPRVAHR 106
+R FV P +D EN +PR+ HR
Sbjct: 118 KRCFVESSPERLSDFENEIKFIPRLQHR 145
>02_05_0258 +
27222058-27223198,27223297-27223460,27224399-27224575,
27224713-27224761,27224991-27225793
Length = 777
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +3
Query: 30 SRMVDIPLSVTMYRWVVNEDRWLNLSDVRHVAPELWRSLC 149
SR + + L + + +W+VN W+N A W +LC
Sbjct: 569 SRDLAMELELELIKWIVNFSSWVNEQRSFIKALNGWLALC 608
>01_06_1842 - 40278875-40280131
Length = 418
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -2
Query: 138 ATAPVPRVAHRLNSATCLRSPPNG 67
ATAP P A +++SA C RS G
Sbjct: 230 ATAPGPAPARKVSSAPCSRSNSRG 253
>12_02_0017 -
12357029-12357070,12357434-12357503,12357722-12357852,
12358836-12358882,12359762-12360044,12360547-12362413,
12362454-12362665
Length = 883
Score = 25.8 bits (54), Expect = 4.8
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -2
Query: 189 QRSFVHDQPHDAADIENATAPVPRVAHRLNSATCLRSPPN 70
+R+F H P ++ AP PR R AT SPP+
Sbjct: 55 RRAFAHPLPAPFPNLSGEPAPTPRAPSR--HATPSSSPPS 92
>08_01_0085 - 626428-627822
Length = 464
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 102 LSDVRHVAPELWRSLCRLRRVA 167
+S ++ V WR++CR RR+A
Sbjct: 274 ISSLQSVLAHTWRAVCRARRLA 295
>08_01_0083 - 604175-605776
Length = 533
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 102 LSDVRHVAPELWRSLCRLRRV 164
+S ++ V LWR++CR RR+
Sbjct: 287 ISSLQAVLAHLWRAVCRARRL 307
>12_02_1107 -
26138512-26138625,26138728-26138763,26139843-26139990,
26140488-26140615,26140768-26140903,26141650-26141739,
26142074-26142282
Length = 286
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -1
Query: 118 CRTSLKFSHLSSFTTQRYIVTDSGISTIRESI 23
C TSL + T +YI+ D G T RE +
Sbjct: 101 CNTSLLIDYCQDEVTHKYILIDVG-KTFREQV 131
>12_01_1072 - 11106298-11106660,11109176-11109463,11109537-11110403
Length = 505
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 105 SDVRHVAPELWRSLCRLRRVA 167
SD +P LWR+ CR RR++
Sbjct: 158 SDGTPTSPVLWRATCRGRRMS 178
>04_04_0711 -
27468045-27468264,27468831-27468935,27469431-27469489,
27469566-27470009,27470123-27470187,27470871-27471066,
27471429-27471590
Length = 416
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -2
Query: 147 IENATAPVPRVAHRLNSATCLRSPP 73
I NA P+PR H +ATC P
Sbjct: 8 IANAAPPLPRRNHATPAATCAALAP 32
>02_01_0619 - 4640149-4640463,4641216-4641458
Length = 185
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = -2
Query: 171 DQPHDAADIENATAPVPRVAHRLNSA--TCLRS 79
D+P ++D EN +AP P + S C RS
Sbjct: 127 DEPMGSSDSENLSAPCPNFVRKKRSGPYICARS 159
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,427,701
Number of Sequences: 37544
Number of extensions: 117386
Number of successful extensions: 283
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 14,793,348
effective HSP length: 46
effective length of database: 13,066,324
effective search space used: 261326480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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