Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_G20
(202 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL023839-2|CAA19508.1| 1066|Caenorhabditis elegans Hypothetical ... 32 0.049
AB006659-1|BAA21847.1| 655|Caenorhabditis elegans E6-AP ubiquit... 32 0.049
U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical p... 29 0.60
Z69663-1|CAA93511.1| 636|Caenorhabditis elegans Hypothetical pr... 26 3.2
U50198-3|AAA91261.2| 503|Caenorhabditis elegans Hypothetical pr... 25 5.6
Z95623-2|CAB09134.1| 509|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z48717-9|CAA88611.1| 509|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z35719-7|CAA84796.1| 211|Caenorhabditis elegans Hypothetical pr... 25 7.4
U80675-1|AAB38969.1| 211|Caenorhabditis elegans GTP binding pro... 25 7.4
AC024857-1|AAK31566.2| 869|Caenorhabditis elegans Temporarily a... 25 7.4
Z48783-5|CAA88699.1| 1385|Caenorhabditis elegans Hypothetical pr... 25 9.8
>AL023839-2|CAA19508.1| 1066|Caenorhabditis elegans Hypothetical
protein Y39A1C.2 protein.
Length = 1066
Score = 32.3 bits (70), Expect = 0.049
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +3
Query: 12 GKAVMDSRMVDIPLSVTMYRWVVNEDRWLNLSDVRHVAPELWRSLCRLRR 161
GKAV + +VD+ L+ + V+ R ++ + PEL+RSL ++R
Sbjct: 784 GKAVYEGIVVDVQLAPVLLAAVLGSHRLCAFDELSQLDPELYRSLTFVKR 833
>AB006659-1|BAA21847.1| 655|Caenorhabditis elegans E6-AP
ubiquitin-protein ligase protein.
Length = 655
Score = 32.3 bits (70), Expect = 0.049
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +3
Query: 12 GKAVMDSRMVDIPLSVTMYRWVVNEDRWLNLSDVRHVAPELWRSLCRLRR 161
GKAV + +VD+ L+ + V+ R ++ + PEL+RSL ++R
Sbjct: 372 GKAVYEGIVVDVQLAPVLLAAVLGSHRLCAFDELSQLDPELYRSLTFVKR 421
>U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical
protein C34D4.14 protein.
Length = 2761
Score = 28.7 bits (61), Expect = 0.60
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 11/72 (15%)
Frame = +3
Query: 15 KAVMDSRMVDIPLSVTMYRWVV-----------NEDRWLNLSDVRHVAPELWRSLCRLRR 161
K ++D R+VD+PLS + +V N + L+L D V P L LR
Sbjct: 2460 KVLLDGRLVDLPLSRPFLKLLVHPQIGDDARGPNLHKILSLDDFEEVNPVKGSFLKELRA 2519
Query: 162 VADRAQMIAADS 197
+A R ++I D+
Sbjct: 2520 LAQRKRLIENDT 2531
>Z69663-1|CAA93511.1| 636|Caenorhabditis elegans Hypothetical
protein K02B9.1 protein.
Length = 636
Score = 26.2 bits (55), Expect = 3.2
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -2
Query: 165 PHDAADIENATAPVPRVAHRLNS 97
P+ A ++NA P P++AHR N+
Sbjct: 231 PNIAYGLQNAGFPAPQIAHRPNT 253
>U50198-3|AAA91261.2| 503|Caenorhabditis elegans Hypothetical
protein R04B3.3 protein.
Length = 503
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 192 RQRSFVHDQPHDAADIENATAPVPRVA 112
+ S V QP AADI++ +PV + A
Sbjct: 286 QSNSVVEQQPKSAADIQSVISPVAQPA 312
>Z95623-2|CAB09134.1| 509|Caenorhabditis elegans Hypothetical
protein T10B9.4 protein.
Length = 509
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +3
Query: 21 VMDSRMVDIPLSVTMYRWVVNEDRWLNLSDVRHVAPELWRS 143
V+ ++V+ + V + W ++ D+ + +DV PE W S
Sbjct: 397 VIGEQIVEAGVDVMIDTWTLHHDKNVWGNDVEEFKPERWDS 437
>Z48717-9|CAA88611.1| 509|Caenorhabditis elegans Hypothetical
protein T10B9.4 protein.
Length = 509
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +3
Query: 21 VMDSRMVDIPLSVTMYRWVVNEDRWLNLSDVRHVAPELWRS 143
V+ ++V+ + V + W ++ D+ + +DV PE W S
Sbjct: 397 VIGEQIVEAGVDVMIDTWTLHHDKNVWGNDVEEFKPERWDS 437
>Z35719-7|CAA84796.1| 211|Caenorhabditis elegans Hypothetical
protein F17C8.4 protein.
Length = 211
Score = 25.0 bits (52), Expect = 7.4
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = -2
Query: 177 VHDQPHDAADIENATAPVPRVAHRLNSATCLRS 79
V P D D E + A VPR R + CL S
Sbjct: 179 VRSFPSDEGDHEASMASVPRTKKRKDKGKCLIS 211
>U80675-1|AAB38969.1| 211|Caenorhabditis elegans GTP binding
protein protein.
Length = 211
Score = 25.0 bits (52), Expect = 7.4
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = -2
Query: 177 VHDQPHDAADIENATAPVPRVAHRLNSATCLRS 79
V P D D E + A VPR R + CL S
Sbjct: 179 VRSFPSDEGDHEASMASVPRTKKRKDKGKCLIS 211
>AC024857-1|AAK31566.2| 869|Caenorhabditis elegans Temporarily
assigned gene nameprotein 305 protein.
Length = 869
Score = 25.0 bits (52), Expect = 7.4
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +3
Query: 30 SRMVDIPLSVTMYRWVVNEDRW 95
S++ S +Y WV N+DRW
Sbjct: 82 SKLASCDASGIIYVWVRNDDRW 103
>Z48783-5|CAA88699.1| 1385|Caenorhabditis elegans Hypothetical
protein F33H1.4 protein.
Length = 1385
Score = 24.6 bits (51), Expect = 9.8
Identities = 12/40 (30%), Positives = 16/40 (40%)
Frame = -2
Query: 189 QRSFVHDQPHDAADIENATAPVPRVAHRLNSATCLRSPPN 70
+R DQ + A + + P P AH N A P N
Sbjct: 233 ERDRDEDQEQEHASVADPAGPPPAPAHLANKANSRGRPAN 272
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,158,339
Number of Sequences: 27780
Number of extensions: 91193
Number of successful extensions: 224
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 12,740,198
effective HSP length: 46
effective length of database: 11,462,318
effective search space used: 229246360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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