Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_G19
         (206 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    27   0.26 
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    26   0.78 
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    23   4.2  
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    23   4.2  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    23   4.2  
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|...    23   5.5  
SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces pomb...    23   5.5  
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|...    23   5.5  
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c...    22   9.6  
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    22   9.6  

>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 27.5 bits (58), Expect = 0.26
 Identities = 16/45 (35%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
 Frame = -1

Query: 131 VHACLSGSYPLFCLLRLLDGICTRH---PSNRPLHTGIRYRLPSC 6
           V  C  G Y L     +L G         SN  LHT +RY  P C
Sbjct: 338 VLTCCVGDYDLIVEELILAGFNPNEVDASSNTALHTAVRYNRPEC 382


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 25.8 bits (54), Expect = 0.78
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +3

Query: 27  NASMQRTIRRVSCTDAVQQSKKTKQRIASRQARMNANVPRNI 152
           NA+  R+  +VS T  +QQS  T         +  +N PR +
Sbjct: 742 NATHARSTSQVSHTQRLQQSISTSLERVKSNTKKESNSPRQV 783


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 95  CLLRLLDGICTRHPSNRPLHTG 30
           C+ RLL+G CT  P    L +G
Sbjct: 620 CVKRLLNGKCTSGPGYVQLRSG 641


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 38  AEDDSTGVVYRCRPAVEEDKTTDSFQTSTHER*CSSKYYD 157
           A DD  G + R   A++ +   DSFQ + + +  S K  D
Sbjct: 11  ATDDDVGTMARVGMALDRELNGDSFQDNLNFQPRSGKRED 50


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 15/53 (28%), Positives = 21/53 (39%)
 Frame = +3

Query: 15  QAIANASMQRTIRRVSCTDAVQQSKKTKQRIASRQARMNANVPRNIMTSLVLH 173
           Q++ NA +Q  +        +  S K K  I     R      RN+ TSL  H
Sbjct: 32  QSLMNADLQHCLL-ADQNYLLNNSNKNKGSIIEENTRKPFQSARNLQTSLKTH 83


>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 418

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 106 IRCFVFFDCWTASVHDTRRIVLCILA 29
           I  F FF+ WT +V    ++ +  LA
Sbjct: 133 IAIFCFFETWTQAVAQCIKVTVIFLA 158


>SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 376

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 14 ASDSECQYAEDDST 55
          ASD +C Y ED+ T
Sbjct: 50 ASDGDCVYEEDEDT 63


>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 402

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 106 IRCFVFFDCWTASVHDTRRIVLCILA 29
           I  F FF+ WT +V    ++ +  LA
Sbjct: 134 IATFCFFETWTQAVAQCIKVTVIFLA 159


>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +2

Query: 38  AEDDSTGVVYRCRPAVEEDKTTD 106
           ++D + G   + +P+ EE+KT+D
Sbjct: 242 SDDKAKGSTSKDQPSEEEEKTSD 264


>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 30  ASMQRTIRRVSCTDAVQQS 86
           + +QR    V CTDA++Q+
Sbjct: 321 SDIQRARSLVECTDAIEQT 339


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 864,452
Number of Sequences: 5004
Number of extensions: 14292
Number of successful extensions: 51
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 48
effective length of database: 2,122,286
effective search space used: 42445720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)